Evidence map›Paper›PMID 26038563›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Substrate-binding domain conformational dynamics mediate Hsp70 allostery.

Anastasia Zhuravleva, Lila M Gierasch

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 122 citations in OpenAlex.

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  19. Effect of temperature and nucleotide on the binding of BiP chaperone to a protein substrate.Protein science : a publication of the Protein Society · 2023
    Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Anastasia ZhuravlevaAstbury Centre for Structural Molecular Biology and Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom; a.zhuravleva@leeds.ac.uk gierasch@biochem.umass.edu.
Lila M GieraschDepartment of Biochemistry and Molecular Biology and Department of Chemistry, University of Massachusetts, Amherst, MA 01003 a.zhuravleva@leeds.ac.uk gierasch@biochem.umass.edu.
University of Leeds · GBUniversity of Massachusetts Amherst · US

Funding

PEPTIDE CONFORMATIONS &INTERACTIONS WITH MEMBRANESR01GM027616 · NIGMS · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI GIERASCH, LILA M · 1985 to 2015
$5.3M
NIGMS NIH HHS GM027616NIGMS NIH HHS R01 GM027616
6 · The paper itself

Abstract

Binding of ATP to the N-terminal nucleotide-binding domain (NBD) of heat shock protein 70 (Hsp70) molecular chaperones reduces the affinity of their C-terminal substrate-binding domain (SBD) for unfolded protein substrates. ATP binding to the NBD leads to docking between NBD and βSBD and releasing of the α-helical lid that covers the substrate-binding cleft in the SBD. However, these structural changes alone do not fully account for the allosteric mechanism of modulation of substrate affinity and binding kinetics. Through a multipronged study of the Escherichia coli Hsp70 DnaK, we found that changes in conformational dynamics within the βSBD play a central role in interdomain allosteric communication in the Hsp70 DnaK. ATP-mediated NBD conformational changes favor formation of NBD contacts with lynchpin sites on the βSBD and force disengagement of SBD strand β8 from strand β7, which leads to repacking of a βSBD hydrophobic cluster and disruption of the hydrophobic arch over the substrate-binding cleft. In turn, these structural rearrangements drastically enhance conformational dynamics throughout the entire βSBD and particularly around the substrate-binding site. This negative, entropically driven allostery between two functional sites of the βSBD-the NBD binding interface and the substrate-binding site-confers upon the SBD the plasticity needed to bind to a wide range of chaperone clients without compromising precise control of thermodynamics and kinetics of chaperone-client interactions.

Indexed as

Models, MolecularAdenosine TriphosphateAllosteric RegulationCarbon IsotopesDeuteriumEscherichia coliEscherichia coli ProteinsHomeostasisHSP70 Heat-Shock ProteinsKineticsMolecular Dynamics SimulationNitrogen IsotopesProtein BindingProtein ConformationProtein Structure, TertiaryAdenosine TriphosphateCarbon IsotopesDeuteriumdnaK protein, E coliEscherichia coli ProteinsHSP70 Heat-Shock ProteinsNitrogen Isotopesconformational selectionentropically driven allosterymolecular chaperoneNMR chemical shift perturbationsprotein quality control

Identifiers

PMID26038563
PMCPMC4460500
OpenAlexW1520350430

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.