Evidence map›Paper›PMID 26038465›Full record

ArticleEmerging microbes & infections2013

Population dynamics of rhesus macaques and associated foamy virus in Bangladesh.

Mostafa M Feeroz, Khanh Soliven, Christopher T Small, Gregory A Engel, M Andreina Pacheco, JoAnn L Yee, Xiaoxing Wang, M Kamrul Hasan, Gunwha Oh, Kathryn L Levine and 10 more

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Mostafa M FeerozJahangirnagar University , Savar, Dhaka 1342, Bangladesh.
Khanh SolivenFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Christopher T SmallFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Gregory A EngelUniversity of Washington , National Primate Research Center, Seattle, WA 98195, USA ; Swedish Medical Center , Seattle, WA 98122, USA.
M Andreina PachecoArizona State University , Tempe, AZ 85287, USA.
JoAnn L YeeUniversity of California , Davis, CA 95616, USA.
Xiaoxing WangFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
M Kamrul HasanJahangirnagar University , Savar, Dhaka 1342, Bangladesh.
Gunwha OhUniversity of Washington , National Primate Research Center, Seattle, WA 98195, USA.
Kathryn L LevineFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
S M Rabiul AlamJahangirnagar University , Savar, Dhaka 1342, Bangladesh.
Karen L CraigFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Dana L JacksonFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Eun-Gyung LeeFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Peter A BarryUniversity of California , Davis, CA 95616, USA.
Nicholas W LercheUniversity of California , Davis, CA 95616, USA.
Ananias A EscalanteArizona State University , Tempe, AZ 85287, USA.
Frederick A Matsen IvFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Maxine L LinialFred Hutchinson Cancer Research Center , Seattle, WA 98109, USA.
Lisa Jones-EngelUniversity of Washington , National Primate Research Center, Seattle, WA 98195, USA.
Fred Hutch Cancer Center · USJahangirnagar University · BDUniversity of California System · USUniversity of Washington · USArizona State University · US

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 1985 to 2011
$161.1M
VIRAL CODED FUNCTIONS IN ROUS SARCOMA VIRUSR01CA018282 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI LINIAL, MAXINE L · 1985 to 2011
$5.0M
Evolution and Emergence of Simian Retroviruses in South AsiaR01AI078229 · NIAID · UNIVERSITY OF WASHINGTON · PI BARRY, PETER A, ESCALANTE, ANANIAS ALBERTO · 2008 to 2012
$3.7M
Primate enteroviruses transmission in BangladeshR03AI064865 · NIAID · UNIVERSITY OF WASHINGTON · PI JONES-ENGEL, LISA E · 2006 to 2007
$172k
NCI NIH HHS R01 CA018282NCRR NIH HHS P51 RR000166NIAID NIH HHS R01 AI078229NIAID NIH HHS R03 AI064865
6 · The paper itself

Abstract

Foamy viruses are complex retroviruses that have been shown to be transmitted from nonhuman primates to humans. In Bangladesh, infection with simian foamy virus (SFV) is ubiquitous among rhesus macaques, which come into contact with humans in diverse locations and contexts throughout the country. We analyzed microsatellite DNA from 126 macaques at six sites in Bangladesh in order to characterize geographic patterns of macaque population structure. We also included in this study 38 macaques owned by nomadic people who train them to perform for audiences. PCR was used to analyze a portion of the proviral gag gene from all SFV-positive macaques, and multiple clones were sequenced. Phylogenetic analysis was used to infer long-term patterns of viral transmission. Analyses of SFV gag gene sequences indicated that macaque populations from different areas harbor genetically distinct strains of SFV, suggesting that geographic features such as forest cover play a role in determining the dispersal of macaques and SFV. We also found evidence suggesting that humans traveling the region with performing macaques likely play a role in the translocation of macaques and SFV. Our studies found that individual animals can harbor more than one strain of SFV and that presence of more than one SFV strain is more common among older animals. Some macaques are infected with SFV that appears to be recombinant. These findings paint a more detailed picture of how geographic and sociocultural factors influence the spectrum of simian-borne retroviruses.

Indexed as

anthropogenic changeBangladeshemerging infectious diseasesmacaquessimian foamy virus

Identifiers

PMID26038465
PMCPMC3675400
OpenAlexW2031027485

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.