ArticlePloS one2015
Large-Scale SNP Discovery and Genotyping for Constructing a High-Density Genetic Map of Tea Plant Using Specific-Locus Amplified Fragment Sequencing (SLAF-seq).
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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38 citing papers in PubMed, 87 citations in OpenAlex.
- Genome wide association analysis of flavour related metabolites in tea germplasm [Camellia sinensis (L.) Kuntze] from Assam using a genotyping by sequencing strategy.BMC plant biology · 2025Article
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- Integrative QTL mapping and candidate gene analysis for main stem node number in soybean.BMC plant biology · 2025Article
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- High-Density Genetic Map Construction and Quantitative Trait Locus Analysis of Fruit- and Oil-Related Traits inInternational journal of molecular sciences · 2024Article
- High-density genetic map construction and QTL mapping of a zigzag-shaped stem trait in tea plant (Camellia sinensis).BMC plant biology · 2024Article
- NIR Spectral Inversion of Soil Physicochemical Properties in Tea Plantations under Different Particle Size States.Sensors (Basel, Switzerland) · 2023Article
- Germplasm Resources and Strategy for Genetic Breeding ofFrontiers in plant science · 2022Review
- Construction of High-Density Genetic Map and Identification of a Bruchid Resistance Locus in Mung Bean (Frontiers in genetics · 2022Article
- Construction of a High-Density Genetic Map and Identification of Quantitative Trait Loci Linked to Fruit Quality Traits in Apricots Using Specific-Locus Amplified Fragment Sequencing.Frontiers in plant science · 2022Article
- QTL Mapping for Leaf Area of Tea Plants (Frontiers in plant science · 2021Article
- QTL mapping for soybean (Glycine max L.) leaf chlorophyll-content traits in a genotyped RIL population by using RAD-seq based high-density linkage map.BMC genomics · 2020Article
- Identification and distribution of a single nucleotide polymorphism responsible for the catechin content in tea plants.Horticulture research · 2020Article
- The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant.Horticulture research · 2020Article
- TeaMiD: a comprehensive database of simple sequence repeat markers of tea.Database : the journal of biological databases and curation · 2020Article
- Tea plant genomics: achievements, challenges and perspectives.Horticulture research · 2020Review
- ddRAD sequencing-based identification of inter-genepool SNPs and association analysis in Brassica juncea.BMC plant biology · 2019Article
- Characterization of genome-wide genetic variations between two varieties of tea plant (Camellia sinensis) and development of InDel markers for genetic research.BMC genomics · 2019Article
- Genetic Mapping of Prince Rupprecht's Larch (Genes · 2019Article
- High-density SNP linkage map construction and QTL mapping for flavonoid-related traits in a tea plant (Camellia sinensis) using 2b-RAD sequencing.BMC genomics · 2018Article
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genetic maps are important tools in plant genomics and breeding. The present study reports the large-scale discovery of single nucleotide polymorphisms (SNPs) for genetic map construction in tea plant. We developed a total of 6,042 valid SNP markers using specific-locus amplified fragment sequencing (SLAF-seq), and subsequently mapped them into the previous framework map. The final map contained 6,448 molecular markers, distributing on fifteen linkage groups corresponding to the number of tea plant chromosomes. The total map length was 3,965 cM, with an average inter-locus distance of 1.0 cM. This map is the first SNP-based reference map of tea plant, as well as the most saturated one developed to date. The SNP markers and map resources generated in this study provide a wealth of genetic information that can serve as a foundation for downstream genetic analyses, such as the fine mapping of quantitative trait loci (QTL), map-based cloning, marker-assisted selection, and anchoring of scaffolds to facilitate the process of whole genome sequencing projects for tea plant.
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