Evidence map›Paper›PMID 26034541›Full record

ArticleJundishapur journal of microbiology2015

Three Tests Used to Identify Non-Culturable Form of Helicobacter pylori in Water Samples.

Parastoo Chamanrokh, Mohammad Hassan Shahhosseiny, Mahnaz Mazaheri Assadi, Taher Nejadsattari, Davood Esmaili

Open access · hybridAbstract read
In one paragraph

Article in Jundishapur journal of microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Research progress in theZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2021
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Parastoo ChamanrokhDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, IR Iran.
Mohammad Hassan ShahhosseinyDepartment of Microbiology, Shahre Qods Branch, Islamic Azad University, Shahre Qods, IR Iran ; Iranian Gene Fanavar Institute (IGF), Tehran, IR Iran.
Mahnaz Mazaheri AssadiDepartment of Biotechnology, Iranian Research Organization for Science and Technology, Tehran, IR Iran.
Taher NejadsattariDepartment of Biology, Science and Research Branch, Islamic Azad University, Tehran, IR Iran.
Davood EsmailiDepartment of Microbiology, Applied Microbiology Research Center, Baqiyatallah University of Medical Sciences, Tehran, IR Iran.
Islamic Azad University, Science and Research Branch · IRBaqiyatallah University of Medical Sciences · IRIranian Research Organization for Science and Technology · IRIslamic Azad University, Shahr-e-Qods Branch · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHelicobacter pylori, causing the most common chronic bacterial infection, exist in two forms; bacilli and coccoid. The coccoid form is identified as viable but non-culturable bacteria.

objectivesThe current study aimed to conduct culture, polymerase chain reaction (PCR), and loop-mediated isothermal amplification (LAMP) tests to identify coccoid forms of H. pylori. MATERIALS AND

methodsThe PCR and LAMP tests were optimized using specific primers for glmM gene. The sensitivity and specificity of the tests were determined. The current experimental study was conducted on 10 different strains isolated from clinical cases (H1-H10). The isolates were added to tap water and incubated at three different temperatures for one and two months intervals. After pure-culturing of the bacteria, DNAs were extracted and PCR and LAMP were performed.

resultsTen copies of targeted DNA were required for PCR detection whereas only five copies gave a positive reaction by LAMP assay, with 100% specificity. Of the 10 isolates inoculated in water for one and two months at three different temperatures 4, 22, and 37°C, only three cases (5%) were found positive in the first month; 13 (21.6%) and 29 cases (48.3%) were also positive by PCR and LAMP tests in the first and second months.

conclusionsResults of the current study confirmed that molecular methods such as PCR and LAMP were much more sensitive, rapid, and specific than culturing to identify non-culturable coccoid forms of H. pylori in water.

Indexed as

CoccoidCultureHelicobacter pyloriLAMPPolymerase Chain Reaction

Identifiers

PMID26034541
PMCPMC4449853
OpenAlexW347183146

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.