Evidence map›Paper›PMID 26034352›Full record

ArticleWorld journal of gastroenterology2015

Insights into glycan biosynthesis in chemically-induced hepatocellular carcinoma in rats: A glycomic analysis.

Amr Amin, Asma Bashir, Nazar Zaki, Diane McCarthy, Sanjida Ahmed, Mohamed Lotfy

Open access · bronzeAbstract read
In one paragraph

Article in World journal of gastroenterology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Altered N-linked glycosylation in endometrial cancer.Analytical and bioanalytical chemistry · 2021
    Article
  5. Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Amr AminAmr Amin, Asma Bashir, Mohamed Lotfy, Department of Biology, College of Science, UAE University, Al-Ain 15551, United Arab Emirates.
Asma BashirAmr Amin, Asma Bashir, Mohamed Lotfy, Department of Biology, College of Science, UAE University, Al-Ain 15551, United Arab Emirates.
Nazar ZakiAmr Amin, Asma Bashir, Mohamed Lotfy, Department of Biology, College of Science, UAE University, Al-Ain 15551, United Arab Emirates.
Diane McCarthyAmr Amin, Asma Bashir, Mohamed Lotfy, Department of Biology, College of Science, UAE University, Al-Ain 15551, United Arab Emirates.
Sanjida AhmedAmr Amin, Asma Bashir, Mohamed Lotfy, Department of Biology, College of Science, UAE University, Al-Ain 15551, United Arab Emirates.
Mohamed LotfyAmr Amin, Asma Bashir, Mohamed Lotfy, Department of Biology, College of Science, UAE University, Al-Ain 15551, United Arab Emirates.
United Arab Emirates University · AE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo evaluate the qualitative and quantitative changes in N-linked glycosylation, which occurred in association with diethyl nitrosamine-induced hepatocellular carcinoma (HCC) in rodents.

methodsLiver tissues of (1) normal (non-tumor-bearing) rats; and (2) tumor-bearing rats; were collected and were used for histological and GlycanMap analyses. Briefly, GlycanMap analysis is a high-throughput assay that provides a structural and quantitative readout of protein-associated glycans using a unique, automated 96-well assay technology coupled to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and custom bioinformatics. Histopathological studies were carried out to ensure the development of HCC in the tested animals.

resultsThe N-glycomic analysis revealed 5 glycans; Glc₁Man₉GlcNAc₂, Gal₂Man₃GlcNac₄Fuc₁Neu₁, Man₄GlcNac₂, Gal₂Man₃GlcNac₄Neu₃OAc₃, and Man₃GlcNac₅ Fuc₁, which showed significant changes in rat HCC tissues when compared with normal liver tissues. Four glycans were increased (P < 0.05) and Glc₁Man₉GlcNAc₂ was decreased (5.89 ± 0.45 vs 3.54 ± 0.21, P < 0.01) in HCC tissues compared to normal liver tissues. An increase (66.5 ± 1.05 vs 62.7 ± 1.1, P < 0.05) in high-mannose structures in HCC rats was observed compared to normal rats. Importantly, HCC rats showed an increase (P < 0.05) in both tumor-associated carbohydrates and in branched glycans. The changes in glycans correlated well with glycan flow changes reported in the glycan biosynthetic pathway, which indicates the importance of enzyme activities involved in glycan synthesis at different subcellular localizations.

conclusionThe reported HCC-associated changes in glycan flow and subcellular localization explain the increase in high mannose glycans and siayl Lewis glycans common in HCC liver tissues.

Indexed as

DiethylnitrosamineGlycomicsAnimalsBiomarkers, TumorCarcinoma, HepatocellularComputational BiologyGlycosylationHigh-Throughput Screening AssaysLiver Neoplasms, ExperimentalMalePolysaccharidesRats, WistarSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkers, TumorDiethylnitrosaminePolysaccharidesBiosynthetic pathwaysGlycomicsHepatocellular carcinomaMatrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Identifiers

PMID26034352
PMCPMC4445094
OpenAlexW619712769

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.