Evidence map›Paper›PMID 26032640›Full record

ArticleBiochemical pharmacology2015

Interspecies differences in the metabolism of methotrexate: An insight into the active site differences between human and rabbit aldehyde oxidase.

Kanika V Choughule, Carolyn A Joswig-Jones, Jeffrey P Jones

Open access · greenAbstract read
In one paragraph

Article in Biochemical pharmacology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Enzyme Kinetics, Pharmacokinetics, and Inhibition of Aldehyde Oxidase.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kanika V ChoughuleDepartment of Chemistry, Washington State University, P.O. Box 644630, Pullman, WA 99164-4630, USA.
Carolyn A Joswig-JonesDepartment of Chemistry, Washington State University, P.O. Box 644630, Pullman, WA 99164-4630, USA.
Jeffrey P JonesDepartment of Chemistry, Washington State University, P.O. Box 644630, Pullman, WA 99164-4630, USA. Electronic address: jpj@wsu.edu.
Washington State University · US

Funding

Understanding the Metabolic Impact of Aldehyde Oxidase on New Drug DesignR01GM100874 · NIGMS · WASHINGTON STATE UNIVERSITY · PI JONES, JEFFREY P · 2012 to 2019
$2.6M
NIGMS NIH HHS GM100874NIGMS NIH HHS R01 GM100874
6 · The paper itself

Abstract

Several drug compounds have failed in clinical trials due to extensive biotransformation by aldehyde oxidase (AOX) (EC 1.2.3.1). One of the main reasons is the difficulty in scaling clearance for drugs metabolised by AOX, from preclinical species to human. Using methotrexate as a probe substrate, we evaluated AOX metabolism in liver cytosol from human and commonly used laboratory species namely guinea pig, monkey, rat and rabbit. We found that the metabolism of methotrexate in rabbit liver cytosol was several orders of magnitude higher than any of the other species tested. The results of protein quantitation revealed that the amount of AOX1 in human liver was similar to rabbit liver. To understand if the observed differences in activity were due to structural differences, we modelled rabbit AOX1 using the previously generated human AOX1 homology model. Molecular docking of methotrexate into the active site of the enzyme led to the identification of important residues that could potentially be involved in substrate binding and account for the observed differences. In order to study the impact of these residue changes on enzyme activity, we used site directed mutagenesis to construct mutant AOX1 cDNAs by substituting nucleotides of human AOX1 with relevant ones of rabbit AOX1. AOX1 mutant proteins were expressed in Escherichia coli. Differences in the kinetic properties of these mutants have been presented in this study.

Indexed as

Aldehyde OxidaseAmino Acid SequenceAnimalsAntimetabolites, AntineoplasticCatalytic DomainGuinea PigsHumansKineticsLiverMacaca mulattaMethotrexateMolecular Docking SimulationMolecular Sequence DataMutagenesis, Site-DirectedOxidation-ReductionRabbitsAldehyde OxidaseAntimetabolites, AntineoplasticAOX1 protein, humanMethotrexate7-Hydoxymethotrexate (PubChem CID: 126941)Aldehyde oxidaseDrug metabolismEnzyme kineticsHomology modellingMethotrexateMethotrexate (PubChem CID: 5484402)Site directed mutagenesis

Identifiers

PMID26032640
PMCPMC4574636
OpenAlexW815720116

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.