Evidence map›Paper›PMID 26032017›Full record

ArticleBMC genomics2015

Characterizing the neurotranscriptomic states in alternative stress coping styles.

Ryan Y Wong, Melissa S Lamm, John Godwin

Abstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  11. Zebrafish (Ecology and evolution · 2024
    Article
  12. Zebrafish (bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ryan Y WongDepartment of Biological Sciences, W.M. Keck Center for Behavioral Biology, North Carolina State University, Box 7614, Raleigh, NC 27695-7614, USA. rwong@unomaha.edu.
Melissa S LammDepartment of Biological Sciences, W.M. Keck Center for Behavioral Biology, North Carolina State University, Box 7614, Raleigh, NC 27695-7614, USA. maslane@ncsu.edu.
John GodwinDepartment of Biological Sciences, W.M. Keck Center for Behavioral Biology, North Carolina State University, Box 7614, Raleigh, NC 27695-7614, USA. godwin@ncsu.edu.

Funding

Wild-derived zebrafish as models for anxiety and stress responsivenessR21MH080500 · NIMH · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI GODWIN, JOHN R · 2011 to 2012
$403k
NIMH NIH HHS 1R21MH080500NIMH NIH HHS R21 MH080500
6 · The paper itself

Abstract

backgroundAnimals experience stress in many contexts and often successfully cope. Individuals exhibiting the proactive versus reactive stress coping styles display qualitatively different behavioral and neuroendocrine responses to stressors. The predisposition to exhibiting a particular coping style is due to genetic and environmental factors. In this study we explore the neurotranscriptomic and gene network biases that are associated with differences between zebrafish (Danio rerio) lines selected for proactive and reactive coping styles and reared in a common garden environment.

resultsUsing RNA-sequencing we quantified the basal transcriptomes from the brains of wild-derived zebrafish lines selectively bred to exhibit the proactive or reactive stress coping style. We identified 1953 genes that differed in baseline gene expression levels. Weighted gene coexpression network analyses identified one gene module associated with line differences. Together with our previous pharmacological experiment, we identified a core set of 62 genes associated with line differences. Gene ontology analyses reveal that many of these core genes are implicated in neurometabolism (e.g. organic acid biosynthetic and fatty acid metabolic processes).

conclusionsOur results show that proactive and reactive stress coping individuals display distinct basal neurotranscriptomic states. Differences in baseline expression of select genes or regulation of specific gene modules are linked to the magnitude of the behavioral response and the display of a coping style, respectively. Our results expand the molecular mechanisms of stress coping from one focused on the neurotransmitter systems to a more complex system that involves an organism's capability to handle neurometabolic loads and allows for comparisons with other animal taxa to uncover potential conserved mechanisms.

Indexed as

TranscriptomeAnimalsBehavior, AnimalBrainFatty AcidsGene Regulatory NetworksReal-Time Polymerase Chain ReactionRNASequence Analysis, RNAStress, PsychologicalZebrafishFatty AcidsRNA

Identifiers

PMID26032017
PMCPMC4450845

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.