ArticlePloS one2015
Fine Mapping and Candidate Gene Analysis of qSTL3, a Stigma Length-Conditioning Locus in Rice (Oryza sativa L.).
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 39 citations in OpenAlex.
- Transcriptional signatures associated with female receptivity and longevity in genetically male-sterile wheat (Triticum aestivum L.).Scientific reports · 2026Article
- Identification of candidate gene controlling TSSL via BSA-seq and fine mapping and germplasm innovation in rice.BMC genomics · 2025Article
- Fine mapping of the dominant female sterility gene and novel model of hybrid seed production in cabbage (Brassica oleracea L. var. capitata).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- New genomic resources to boost research in reproductive biology to enable cost-effective hybrid seed production.The plant genome · 2025Article
- Elite Alleles of EPE1 Identified via Genome-wide Association Studies Increase Panicle Elongation Length in Rice.Rice (New York, N.Y.) · 2025Article
- Mapping of quantitative trait loci for early seed germination using whole-genome resequencing chromosome segment substitution lines of aus Kasalath in the background of japonica Nipponbare.Frontiers in plant science · 2025Article
- Genetic Analysis and Fine Mapping of QTLs for Stigma Exsertion Rate in Rice.Rice (New York, N.Y.) · 2024Article
- Research Progress on the Trait of Stigma Exsertion in Rice.Plants (Basel, Switzerland) · 2024Review
- Four QTLs control stigma exsertion rate by changing stigma size in rice.Molecular breeding : new strategies in plant improvement · 2024Article
- Hybrid Rice Production: A Worldwide Review of Floral Traits and Breeding Technology, with Special Emphasis on China.Plants (Basel, Switzerland) · 2024Review
- Genetic control of morphological traits useful for improving sorghum.Breeding science · 2023Article
- Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice.Plant biotechnology journal · 2023Article
- Detection of QTLs Regulating Six Agronomic Traits of Rice Based on Chromosome Segment Substitution Lines of Common Wild Rice (Biomolecules · 2022Article
- Fine mapping and target gene identification ofFrontiers in plant science · 2022Article
- SYL3-k increases style length and yield of FTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Potential roles of stigma exsertion on spikelet fertility in rice (Frontiers in plant science · 2022Review
- QTL Mapping of a Novel Genomic Region Associated with High Out-Crossing Rate Derived from Oryza longistaminata and Development of New CMS Lines in Rice, O. sativa L.Rice (New York, N.Y.) · 2021Article
- Genetic dissection of QTLs associated with spikelet-related traits and grain size in sorghum.Scientific reports · 2021Article
- Transformation and Overexpression of Primary Cell Wall Synthesis-Related Zinc Finger GeneFrontiers in plant science · 2021Article
- OsSYL2The Plant journal : for cell and molecular biology · 2020Article
Corrections and comments
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Authors and funding
12 authors at 2 institutions in 1 country.
Funding
Abstract
The efficiency of hybrid seed production can be improved by increasing the percentage of exserted stigma, which is closely related to the stigma length in rice. In the chromosome segment substitute line (CSSL) population derived from Nipponbare (recipient) and Kasalath (donor), a single CSSL (SSSL14) was found to show a longer stigma length than that of Nipponbare. The difference in stigma length between Nipponbare and SSSL14 was controlled by one locus (qSTL3). Using 7,917 individuals from the SSSL14/Nipponbare F2 population, the qSTL3 locus was delimited to a 19.8-kb region in the middle of the short arm of chromosome 3. Within the 19.8-kb chromosome region, three annotated genes (LOC_Os03g14850, LOC_Os03g14860 and LOC_Os03g14880) were found in the rice genome annotation database. According to gene sequence alignments in LOC_Os03g14850, a transition of G (Nipponbare) to A (Kasalath) was detected at the 474-bp site in CDS. The transition created a stop codon, leading to a deletion of 28 amino acids in the deduced peptide sequence in Kasalath. A T-DNA insertion mutant (05Z11CN28) of LOC_Os03g14850 showed a longer stigma length than that of wild type (Zhonghua 11), validating that LOC_Os03g14850 is the gene controlling stigma length. However, the Kasalath allele of LOC_Os03g14850 is unique because all of the alleles were the same as that of Nipponbare at the 474-bp site in the CDS of LOC_Os03g14850 among the investigated accessions with different stigma lengths. A gene-specific InDel marker LQ30 was developed for improving stigma length during rice hybrid breeding by marker-assisted selection.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.