Evidence map›Paper›PMID 26030808›Full record

ArticleAmerican journal of respiratory and critical care medicine2015

Exome Sequencing of Neonatal Blood Spots and the Identification of Genes Implicated in Bronchopulmonary Dysplasia.

Jingjing Li, Kun-Hsing Yu, John Oehlert, Laura L Jeliffe-Pawlowski, Jeffrey B Gould, David K Stevenson, Michael Snyder, Gary M Shaw, Hugh M O'Brodovich

Open access · greenAbstract readTwin Study
In one paragraph

Article in American journal of respiratory and critical care medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 86 citations in OpenAlex.

  1. Trial
  2. Ancestry and genetic associations with bronchopulmonary dysplasia in preterm infants.American journal of physiology. Lung cellular and molecular physiology · 2018
    Trial
  3. Trial
  4. Article
  5. Article
  6. Review
  7. Toward precision for bronchopulmonary dysplasia: Moving past current definitions.Journal of perinatology : official journal of the California Perinatal Association · 2026
    Review
  8. Review
  9. [Expression and regulatory mechanism of miR-34a in neonatal rat model of bron-chopulmonary dysplasia induced by hyperoxia].Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Early Origins of Chronic Obstructive Pulmonary Disease: Prenatal and Early Life Risk Factors.International journal of environmental research and public health · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jingjing Li1 Department of Genetics, Center for Genomics and Personalized Medicine.
Kun-Hsing Yu1 Department of Genetics, Center for Genomics and Personalized Medicine.ORCID http://orcid.org/0000-0001-9892-8218
John Oehlert3 Department of Pediatrics, Stanford University School of Medicine, Stanford, California.
Laura L Jeliffe-Pawlowski4 California Department of Public Health, Richmond, California; and.
Jeffrey B Gould3 Department of Pediatrics, Stanford University School of Medicine, Stanford, California.
David K Stevenson3 Department of Pediatrics, Stanford University School of Medicine, Stanford, California.
Michael Snyder1 Department of Genetics, Center for Genomics and Personalized Medicine.
Gary M Shaw3 Department of Pediatrics, Stanford University School of Medicine, Stanford, California.
Hugh M O'Brodovich3 Department of Pediatrics, Stanford University School of Medicine, Stanford, California.
Stanford Medicine · USInstitut thématique Génétique, génomique et bioinformatique · FRCalifornia Department of Public Health · US

Funding

Integrative Omics as a Discovery Tool for Pulmonary HypertensionR01HL122887 · NHLBI · STANFORD UNIVERSITY · PI NICOLLS, MARK ROBERT, RABINOVITCH, MARLENE · 2015 to 2018
$4.1M
Genomic Influences on Bronchopulmonary Dysplasia-A Population-Based StudyRC2HL101748 · NHLBI · STANFORD UNIVERSITY · PI OBRODOVICH, HUGH · 2009 to 2010
$3.5M
Robust, Generalizable, and Fair Machine Learning Models for BiomedicineR35GM142879 · NIGMS · HARVARD MEDICAL SCHOOL · PI YU, KUN-HSING · 2021 to 2025
$2.4M
NHGRI NIH HHS 1P50HG00773501NHGRI NIH HHS 5P50HG00773502NHLBI NIH HHS 5U01HL10739304NHLBI NIH HHS R01 HL122887NHLBI NIH HHS RC2 HL101748NIGMS NIH HHS R35 GM142879
6 · The paper itself

Abstract

rationaleBronchopulmonary dysplasia (BPD), a prevalent severe lung disease of premature infants, has a strong genetic component. Large-scale genome-wide association studies for common variants have not revealed its genetic basis.

objectivesGiven the historical high mortality rate of extremely preterm infants who now survive and develop BPD, we hypothesized that risk loci underlying this disease are under severe purifying selection during evolution; thus, rare variants likely explain greater risk of the disease.

methodsWe performed exome sequencing on 50 BPD-affected and unaffected twin pairs using DNA isolated from neonatal blood spots and identified genes affected by extremely rare nonsynonymous mutations. Functional genomic approaches were then used to systematically compare these affected genes. MEASUREMENTS AND MAIN

resultsWe identified 258 genes with rare nonsynonymous mutations in patients with BPD. These genes were highly enriched for processes involved in pulmonary structure and function including collagen fibril organization, morphogenesis of embryonic epithelium, and regulation of Wnt signaling pathway; displayed significantly elevated expression in fetal and adult lungs; and were substantially up-regulated in a murine model of BPD. Analyses of mouse mutants revealed their phenotypic enrichment for embryonic development and the cyanosis phenotype, a clinical manifestation of BPD.

conclusionsOur study supports the role of rare variants in BPD, in contrast with the role of common variants targeted by genome-wide association studies. Overall, our study is the first to sequence BPD exomes from newborn blood spot samples and identify with high confidence genes implicated in BPD, thereby providing important insights into its biology and molecular etiology.

Indexed as

AnimalsBlood Specimen CollectionBronchopulmonary DysplasiaCase-Control StudiesExomeFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHaploinsufficiencyHumansInfantInfant, Extremely PrematureInfant, NewbornInfant, PrematureLungMalebronchopulmonary dysplasiachronic lung diseaseexome sequencinggenetic predisposition to diseasepremature

Identifiers

PMID26030808
PMCPMC4595691
OpenAlexW2111593921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.