ArticlePloS one2015
DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- TopoRoot+: computing whorl and soil line traits of field-excavated maize roots from CT imaging.Plant methods · 2024Article
- Quantification of the three-dimensional root system architecture using an automated rotating imaging system.Plant methods · 2023Article
- Topological data analysis expands the genotype to phenotype map for 3D maize root system architecture.Frontiers in plant science · 2023Article
- A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Frontiers in plant science · 2023Article
- High-throughput and automatic structural and developmental root phenotyping on Arabidopsis seedlings.Plant methods · 2022Article
- Recent trends in root phenomics of plant systems with available methods- discrepancies and consonances.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Review
- 4DRoot: Root phenotyping software for temporal 3D scans by X-ray computed tomography.Frontiers in plant science · 2022Article
- TopoRoot: a method for computing hierarchy and fine-grained traits of maize roots from 3D imaging.Plant methods · 2021Article
- DIRT/3D: 3D root phenotyping for field-grown maize (Zea mays).Plant physiology · 2021Article
- Genome-wide association screening and verification of potential genes associated with root architectural traits in maize (Zea mays L.) at multiple seedling stages.BMC genomics · 2021Article
- Complementary Phenotyping of Maize Root System Architecture by Root Pulling Force and X-Ray Imaging.Plant phenomics (Washington, D.C.) · 2021Article
- Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: implications for understanding cluster density.Journal of experimental botany · 2019Article
- TRANSPORTER OF IBA1 Links Auxin and Cytokinin to Influence Root Architecture.Developmental cell · 2019Article
- Unearthing Root Growth Dynamics through 3D Time-Lapse Imaging.The Plant cell · 2019Article
- Three-Dimensional Time-Lapse Analysis Reveals Multiscale Relationships in Maize Root Systems with Contrasting Architectures.The Plant cell · 2019Article
- The Quantitative Genetic Control of Root Architecture in Maize.Plant & cell physiology · 2018Article
- Generalized box-plot for root growth ensembles.BMC bioinformatics · 2017Article
- Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.Frontiers in plant science · 2017Review
- Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology.Frontiers in plant science · 2017Review
- Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics.Plant methods · 2015Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present a software platform for reconstructing and analyzing the growth of a plant root system from a time-series of 3D voxelized shapes. It aligns the shapes with each other, constructs a geometric graph representation together with the function that records the time of growth, and organizes the branches into a hierarchy that reflects the order of creation. The software includes the automatic computation of structural and dynamic traits for each root in the system enabling the quantification of growth on fine-scale. These are important advances in plant phenotyping with applications to the study of genetic and environmental influences on growth.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.