Evidence map›Paper›PMID 26030479›Full record

ArticleAmerican journal of respiratory and critical care medicine2015

RNA Sequencing Analysis Detection of a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension.

Christopher J Rhodes, Hogune Im, Aiqin Cao, Jan K Hennigs, Lingli Wang, Silin Sa, Pin-I Chen, Nils P Nickel, Kazuya Miyagawa, Rachel K Hopper and 14 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Beyond classical collagen: basement membrane collagen IV in age-associated lung diseases.European respiratory review : an official journal of the European Respiratory Society · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Biomarkers in Pulmonary Arterial Hypertension.Diagnostics (Basel, Switzerland) · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 1 institution in 2 countries.

Christopher J Rhodes1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Hogune Im2 Cardiovascular Institute.
Aiqin Cao1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Jan K Hennigs1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Lingli Wang1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Silin Sa1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Pin-I Chen1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Nils P Nickel1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Kazuya Miyagawa1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Rachel K Hopper1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Nancy F Tojais1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Caiyun G Li1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Mingxia Gu1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Edda Spiekerkoetter1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Zhaoying Xian1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Rui Chen2 Cardiovascular Institute.
Mingming Zhao2 Cardiovascular Institute.
Mark Kaschwich1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Patricia A Del Rosario1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Daniel Bernstein2 Cardiovascular Institute.
Roham T Zamanian1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Joseph C Wu2 Cardiovascular Institute.
Michael P Snyder2 Cardiovascular Institute.
Marlene Rabinovitch1 Vera Moulton Wall Center for Pulmonary Vascular Diseases.
Cardiovascular Institute Hospital · JP

Funding

MICHIGAN INSTITUTE FOR CLINICAL AND HEALTH RESEARCH (MICHR) (UL1): (BPCA)UL1RR024986 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHANLEY, THOMAS P. · 2007 to 2011
$51.2M
Michigan Institute for Clinical and Health Research (MCHR)UL1TR000433 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MASHOUR, GEORGE ALEXANDER · 2012 to 2016
$49.9M
Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
Stanford Center for Clinical and Translational Education and Research (SCCTER)UL1UL1RR025744 · NCRR · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2008 to 2011
$22.4M
Pulmonary Hypertension Breakthrough InitiativeR24HL123767 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI ALDRED, MICHEALA A, ERZURUM, SERPIL C. · 2014 to 2017
$10.1M
iPSC Derived EC as Surrogates Using Pulmonary Hypertension as a Prototype DiseaseU01HL107393 · NHLBI · STANFORD UNIVERSITY · PI RABINOVITCH, MARLENE, SNYDER, MICHAEL P. · 2011 to 2015
$8.7M
Airway redox biochemistry as a deteriminant of asthma phenotype during adolescen*U10HL109250 · NHLBI · UNIVERSITY OF VIRGINIA · PI ERZURUM, SERPIL C., GASTON, BENJAMIN · 2011 to 2016
$4.2M
Modulating BMPRII Signaling in Pulmonary Arterial HypertensionK08HL107450 · NHLBI · STANFORD UNIVERSITY · PI SPIEKERKOETTER, EDDA FRAUKE · 2011 to 2015
$606k
NCATS NIH HHS UL1 TR000433NCATS NIH HHS UL1 TR001085NCRR NIH HHS UL1 RR024986NCRR NIH HHS UL1RR024986NCRR NIH HHS UL1 RR025744NHLBI NIH HHS K08 HL107450NHLBI NIH HHS R24 HL123767NHLBI NIH HHS U01 HL107393NHLBI NIH HHS U10 HL109250
6 · The paper itself

Abstract

rationalePulmonary arterial hypertension is characterized by endothelial dysregulation, but global changes in gene expression have not been related to perturbations in function.

objectivesRNA sequencing was used to discriminate changes in transcriptomes of endothelial cells cultured from lungs of patients with idiopathic pulmonary arterial hypertension versus control subjects and to assess the functional significance of major differentially expressed transcripts.

methodsThe endothelial transcriptomes from the lungs of seven control subjects and six patients with idiopathic pulmonary arterial hypertension were analyzed. Differentially expressed genes were related to bone morphogenetic protein type 2 receptor (BMPR2) signaling. Those down-regulated were assessed for function in cultured cells and in a transgenic mouse. MEASUREMENTS AND MAIN

resultsFold differences in 10 genes were significant (P < 0.05), four increased and six decreased in patients versus control subjects. No patient was mutant for BMPR2. However, knockdown of BMPR2 by siRNA in control pulmonary arterial endothelial cells recapitulated 6 of 10 patient-related gene changes, including decreased collagen IV (COL4A1, COL4A2) and ephrinA1 (EFNA1). Reduction of BMPR2-regulated transcripts was related to decreased β-catenin. Reducing COL4A1, COL4A2, and EFNA1 by siRNA inhibited pulmonary endothelial adhesion, migration, and tube formation. In mice null for the EFNA1 receptor, EphA2, versus control animals, vascular endothelial growth factor receptor blockade and hypoxia caused more severe pulmonary hypertension, judged by elevated right ventricular systolic pressure, right ventricular hypertrophy, and loss of small arteries.

conclusionsThe novel relationship between BMPR2 dysfunction and reduced expression of endothelial COL4 and EFNA1 may underlie vulnerability to injury in pulmonary arterial hypertension.

Indexed as

AdolescentAdultAnimalsBone Morphogenetic Protein Receptors, Type IICells, CulturedEndothelium, VascularFamilial Primary Pulmonary HypertensionFemaleHumansMaleMiceMice, TransgenicMiddle AgedSequence Analysis, RNASignal TransductionTranscriptomeBMPR2 protein, humanBmpr2 protein, mouseBone Morphogenetic Protein Receptors, Type IIcollagen IVephrinpulmonary hypertensiontranscriptomevascular endothelium

Identifiers

PMID26030479
PMCPMC4584250
OpenAlexW2100250557

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.