Evidence map›Paper›PMID 26030368›Full record

ArticleACS chemical neuroscience2015

Targeting the cyclophilin domain of Ran-binding protein 2 (Ranbp2) with novel small molecules to control the proteostasis of STAT3, hnRNPA2B1 and M-opsin.

Kyoung-In Cho, Andrew Orry, Se Eun Park, Paulo A Ferreira

Abstract read
In one paragraph

Article in ACS chemical neuroscience, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Kyoung-In Cho†Department of Ophthalmology, Duke University Medical Center, Durham, North Carolina 27710, United States.
Andrew Orry‡MolSoft LLC, San Diego, California 92121, United States.
Se Eun Park†Department of Ophthalmology, Duke University Medical Center, Durham, North Carolina 27710, United States.
Paulo A Ferreira†Department of Ophthalmology, Duke University Medical Center, Durham, North Carolina 27710, United States.
Duke University Hospital · USDuke Medical Center · USMolsoft (United States) · US

Funding

Genetic and Molecular Analyses of Protein Biogenesis in the NeuroretinaR01EY019492 · NEI · DUKE UNIVERSITY · PI FERREIRA, PAULO A · 2010 to 2013
$1.5M
Genetic and Molecular Dissection of RanBP2-Mediated RanGTPase FunctionsR01GM083165 · NIGMS · DUKE UNIVERSITY · PI FERREIRA, PAULO A · 2010 to 2013
$1.4M
NEI NIH HHS EY019492NEI NIH HHS R01 EY019492NIGMS NIH HHS GM083165NIGMS NIH HHS R01 GM083165
6 · The paper itself

Abstract

Cyclophilins are peptidyl cis-trans prolyl isomerases (PPIases), whose activity is typically inhibited by cyclosporine A (CsA), a potent immunosuppressor. Cyclophilins are also chaperones. Emerging evidence supports that cyclophilins present nonoverlapping PPIase and chaperone activities. The proteostasis of the disease-relevant substrates, signal transducer and activator of transcription 3 and 5 (STAT3/STAT5), heterogeneous nuclear ribonucleoprotein A2B1 (hnRNPA2B1), and M-opsin, is regulated by nonoverlapping chaperone and PPIase activities of the cyclophilin domain (CY) of Ranbp2, a multifunctional and modular scaffold that controls nucleocytoplasmic shuttling and proteostasis of selective substrates. Although highly homologous, CY and the archetypal cyclophilin A (CyPA) present distinct catalytic and CsA-binding activities owing to unique structural features between these cylophilins. We explored structural idiosyncrasies between CY and CyPA to screen in silico nearly 9 million small molecules (SM) against the CY PPIase pocket and identify SMs with selective bioactivity toward STAT3, hnRNPA2B1, or M-opsin proteostasis. We found three classes of SMs that enhance the cytokine-stimulated transcriptional activity of STAT3 without changing latent and activated STAT3 levels, down-regulate hnRNPA2B1 or M-opsin proteostasis, or a combination of these. Further, a SM that suppresses hnRNPA2B1 proteostasis also inhibits strongly and selectively the PPIase activity of CY. This study unravels chemical probes for multimodal regulation of CY of Ranbp2 and its substrates, and this regulation likely results in the allosterism stemming from the interconversion of conformational substates of cyclophilins. The results also demonstrate the feasibility of CY in drug discovery against disease-relevant substrates controlled by Ranbp2, and they open new opportunities for therapeutic interventions.

Indexed as

Amino Acid SequenceCyclophilin AHeLa CellsHeterogeneous-Nuclear Ribonucleoprotein Group A-BHumansLigandsMolecular ChaperonesMolecular Sequence DataMolecular StructureNuclear Pore Complex ProteinsOpsinsSequence Homology, Amino AcidSTAT3 Transcription FactorCyclophilin AHeterogeneous-Nuclear Ribonucleoprotein Group A-BhnRNP A2LigandsMolecular ChaperonesNuclear Pore Complex ProteinsOpsinsran-binding protein 2STAT3 Transcription Factorchaperonechemical ligandscyclophilinhnRNPA2B1M-opsinproteostasisRan-binding protein 2 (Ranbp2)STAT3

Identifiers

PMID26030368
PMCPMC4556350
OpenAlexW659487895

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.