Evidence map›Paper›PMID 26030358›Full record

ArticlePloS one2015

Combination Patterns of Major R Genes Determine the Level of Resistance to the M. oryzae in Rice (Oryza sativa L.).

Yunyu Wu, Ning Xiao, Ling Yu, Cunhong Pan, Yuhong Li, Xiaoxiang Zhang, Guangqing Liu, Zhengyuan Dai, Xuebiao Pan, Aihong Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
7.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 96 citations in OpenAlex.

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  10. A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  11. Understanding the Dynamics of Blast Resistance in Rice-Journal of fungi (Basel, Switzerland) · 2022
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  14. Identification and fine mapping ofMolecular breeding : new strategies in plant improvement · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yunyu WuLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China; Key Laboratory of Plant Functional Genomics, Ministry of Education, Yangzhou University, Yangzhou, 225009, P.R. China.
Ning XiaoLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Ling YuLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Cunhong PanLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Yuhong LiLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Xiaoxiang ZhangLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Guangqing LiuLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Zhengyuan DaiLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Xuebiao PanKey Laboratory of Plant Functional Genomics, Ministry of Education, Yangzhou University, Yangzhou, 225009, P.R. China.
Aihong LiLixiahe Agricultural Research Institute of Jiangsu Province, Yangzhou, 225007, P.R. China.
Sanming Agricultural Science Research Institute · CNYangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice blast caused by Magnaporthe oryzae is the most devastating disease of rice and poses a serious threat to world food security. In this study, the distribution and effectiveness of 18 R genes in 277 accessions were investigated based on pathogenicity assays and molecular markers. The results showed that most of the accessions exhibited some degree of resistance (resistance frequency, RF >50%). Accordingly, most of the accessions were observed to harbor two or more R genes, and the number of R genes harbored in accessions was significantly positively correlated with RF. Some R genes were demonstrated to be specifically distributed in the genomes of rice sub-species, such as Pigm, Pi9, Pi5 and Pi1, which were only detected in indica-type accessions, and Pik and Piz, which were just harbored in japonica-type accessions. By analyzing the relationship between R genes and RF using a multiple stepwise regression model, the R genes Pid3, Pi5, Pi9, Pi54, Pigm and Pit were found to show the main effects against M. oryzae in indica-type accessions, while Pita, Pb1, Pik, Pizt and Pia were indicated to exhibit the main effects against M. oryzae in japonica-type accessions. Principal component analysis (PCA) and cluster analysis revealed that combination patterns of major R genes were the main factors determining the resistance of rice varieties to M. oryzae, such as 'Pi9+Pi54', 'Pid3+Pigm', 'Pi5+Pid3+Pigm', 'Pi5+Pi54+Pid3+Pigm', 'Pi5+Pid3' and 'Pi5+Pit+Pid3' in indica-type accessions and 'Pik+Pib', 'Pik+Pita', 'Pik+Pb1', 'Pizt+Pia' and 'Pizt+Pita' in japonica-type accessions, which were able to confer effective resistance against M. oryzae. The above results provide good theoretical support for the rational utilization of combinations of major R genes in developing rice cultivars with broad-spectrum resistance.

Indexed as

Disease ResistanceMagnaportheOryzaPlant DiseasesPlant ProteinsPlant Proteins

Identifiers

PMID26030358
PMCPMC4452627
OpenAlexW617232805

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.