Evidence map›Paper›PMID 26030024›Full record

ArticleNature immunology2015

Regulation of DNA methylation dictates Cd4 expression during the development of helper and cytotoxic T cell lineages.

MacLean Sellars, Jun R Huh, Kenneth Day, Priya D Issuree, Carolina Galan, Stephane Gobeil, Devin Absher, Michael R Green, Dan R Littman

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Widespread genomicEpigenetics · 2024
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  10. A conserved element in the first intron ofFrontiers in immunology · 2024
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  12. Impact ofFrontiers in genetics · 2023
    Article
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  14. Review
  15. Article
  16. Epigenetic Alterations in Inborn Errors of Immunity.Journal of clinical medicine · 2022
    Review
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

MacLean Sellars1] The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York, USA. [2] Howard Hughes Medical Institute, New York University School of Medicine, New York, New York, USA.
Jun R Huh1] The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York, USA. [2] Howard Hughes Medical Institute, New York University School of Medicine, New York, New York, USA. [3] Division of Infectious Disease and Immunology, Department of Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Kenneth DayHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Priya D Issuree1] The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York, USA. [2] Howard Hughes Medical Institute, New York University School of Medicine, New York, New York, USA.
Carolina Galan1] The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York, USA. [2] Howard Hughes Medical Institute, New York University School of Medicine, New York, New York, USA.
Stephane Gobeil1] Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA. [2] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Devin AbsherHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Michael R Green1] Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA. [2] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Dan R Littman1] The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, New York, USA. [2] Howard Hughes Medical Institute, New York University School of Medicine, New York, New York, USA.
New York University · USHudsonAlpha Institute for Biotechnology · USUniversity of Massachusetts Chan Medical School · USHoward Hughes Medical Institute · US

Funding

TRAINING PROGRAM IN MOLECULAR ONCOLOGY &IMMUNOLOGYT32CA009161 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARROLL, WILLIAM L., LEVY, DAVID E · 1985 to 2020
$13.3M
TRANSCRIPTIONAL ACTIVATION BY THE ADENOVIRUS ELA PROTEINR01GM033977 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREEN, MICHAEL R · 1985 to 2013
$3.2M
Chemical and genetic studies of RORgamma and its critical roles in IBDR00DK091508 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI HUH, JUN R. · 2013 to 2015
$747k
Chemical and genetic studies of RORgamma and its critical roles in IBDK99DK091508 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HUH, JUN R. · 2011 to 2012
$180k
Howard Hughes Medical InstituteNCI NIH HHS 5 T32 CA009161-36NCI NIH HHS T32 CA009161NIDDK NIH HHS K99 DK091508NIDDK NIH HHS R00 DK091508NIDDK NIH HHS R00DK091508NIGMS NIH HHS GM033977NIGMS NIH HHS R01 GM033977
6 · The paper itself

Abstract

During development, progenitor cells with binary potential give rise to daughter cells that have distinct functions. Heritable epigenetic mechanisms then lock in gene-expression programs that define lineage identity. Regulation of the gene encoding the T cell-specific coreceptor CD4 in helper and cytotoxic T cells exemplifies this process, with enhancer- and silencer-regulated establishment of epigenetic memory for stable gene expression and repression, respectively. Using a genetic screen, we identified the DNA-methylation machinery as essential for maintaining silencing of Cd4 in the cytotoxic lineage. Furthermore, we found a requirement for the proximal enhancer in mediating the removal of DNA-methylation marks from Cd4, which allowed stable expression of Cd4 in helper T cells. Our findings suggest that stage-specific methylation and demethylation events in Cd4 regulate its heritable expression in response to the distinct signals that dictate lineage 'choice' during T cell development.

Indexed as

AnimalsCD4 AntigensCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell DifferentiationCell LineageCells, CulturedChromatinDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA MethylationFlow CytometryGene ExpressionHEK293 CellsHumansMice, KnockoutCD4 AntigensChromatinDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesTranscription FactorsZbtb7b protein, mouse

Identifiers

PMID26030024
PMCPMC4474743
OpenAlexW1504663603

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.