Evidence map›Paper›PMID 26029669›Full record

ArticleFrontiers in cellular and infection microbiology2015

Extracellular matrix-associated proteins form an integral and dynamic system during Pseudomonas aeruginosa biofilm development.

Weipeng Zhang, Jin Sun, Wei Ding, Jinshui Lin, Renmao Tian, Liang Lu, Xiaofen Liu, Xihui Shen, Pei-Yuan Qian

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 62 citations in OpenAlex.

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  11. OprF impactsbioRxiv : the preprint server for biology · 2023
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  20. A Crosstalk BetweenFrontiers in microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Weipeng ZhangDivision of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Jin SunDepartment of Biology, Hong Kong Baptist University Hong Kong, China.
Wei DingState Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A & F University Yangling, China.
Jinshui LinState Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A & F University Yangling, China.
Renmao TianDivision of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Liang LuDivision of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Xiaofen LiuDivision of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Xihui ShenState Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A & F University Yangling, China.
Pei-Yuan QianDivision of Life Science, The Hong Kong University of Science and Technology Hong Kong, China.
Hong Kong University of Science and Technology · HKNorth West Agriculture and Forestry University · CNHong Kong Baptist University · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Though the essential role of extracellular matrix in biofilm development has been extensively documented, the function of matrix-associated proteins is elusive. Determining the dynamics of matrix-associated proteins would be a useful way to reveal their functions in biofilm development. Therefore, we applied iTRAQ-based quantitative proteomics to evaluate matrix-associated proteins isolated from different phases of Pseudomonas aeruginosa ATCC27853 biofilms. Among the identified 389 proteins, 54 changed their abundance significantly. The increased abundance of stress resistance and nutrient metabolism-related proteins over the period of biofilm development was consistent with the hypothesis that biofilm matrix forms micro-environments in which cells are optimally organized to resist stress and use available nutrients. Secreted proteins, including novel putative effectors of the type III secretion system were identified, suggesting that the dynamics of pathogenesis-related proteins in the matrix are associated with biofilm development. Interestingly, there was a good correlation between the abundance changes of matrix-associated proteins and their expression. Further analysis revealed complex interactions among these modulated proteins, and the mutation of selected proteins attenuated biofilm development. Collectively, this work presents the first dynamic picture of matrix-associated proteins during biofilm development, and provides evidences that the matrix-associated proteins may form an integral and well regulated system that contributes to stress resistance, nutrient acquisition, pathogenesis and the stability of the biofilm.

Indexed as

Bacterial ProteinsBiofilmsExtracellular MatrixHumansProteomePseudomonas aeruginosaBacterial ProteinsProteomebiofilmiTRAQmatrix-associated proteinsPseudomonas aeruginosa ATCC27853type three secretion system

Identifiers

PMID26029669
PMCPMC4429628
OpenAlexW1764213630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.