Evidence map›Paper›PMID 26028593›Full record

ArticleNature communications2015

Identification of new susceptibility loci for IgA nephropathy in Han Chinese.

Ming Li, Jia-Nee Foo, Jin-Quan Wang, Hui-Qi Low, Xue-Qing Tang, Kai-Yee Toh, Pei-Ran Yin, Chiea-Chuen Khor, Yu-Fen Goh, Ishak D Irwan and 31 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 6 pooled it
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 6 syntheses or guidelines pooled it, 134 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Guideline
  5. Pooled it
  6. Pooled it
  7. Trial
  8. A Rare Genetic Defect ofFrontiers in immunology · 2019
    Trial
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 20 institutions in 2 countries.

Ming LiDepartment of Nephrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou , Guangdong 510080, China.
Jia-Nee FooHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Jin-Quan WangNational Clinical Research Center of Kidney Diseases, Jinling Hospital, Nanjing University School of Medicine, Nanjing, Jiangsu 210002, China.
Hui-Qi LowHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Xue-Qing TangDepartment of Nephrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou , Guangdong 510080, China.
Kai-Yee TohHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Pei-Ran YinDepartment of Nephrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou , Guangdong 510080, China.
Chiea-Chuen KhorHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Yu-Fen GohHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Ishak D IrwanHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Ri-Cong XuDepartment of Nephrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou , Guangdong 510080, China.
Anand K AndiappanSingapore Immunology Network, Agency for Science, Technology and Research, Singapore 138648, Singapore.
Jin-Xin BeiHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Olaf RotzschkeSingapore Immunology Network, Agency for Science, Technology and Research, Singapore 138648, Singapore.
Meng-Hua ChenDepartment of Nephrology, General Hospital of Ningxia Medical University, Yinchuan, Ningxia 750004, China.
Ching-Yu ChengSingapore Eye Research Institute, Singapore 169856, Singapore.
Liang-Dan SunInstitute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, 230032, China.
Geng-Ru JiangDepartment of Nephrology, XinHua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200092, China.
Tien-Yin WongSingapore Eye Research Institute, Singapore 169856, Singapore.
Hong-Li LinDepartment of Nephrology, The First Affiliated Hospital, Dalian Medical University, Dalian, Liaoning 116011, China.
Tin AungSingapore Eye Research Institute, Singapore 169856, Singapore.
Yun-Hua LiaoDepartment of Nephrology, The First Affiliated Hospital, Guangxi Medical University, Nanning 530021, China.
Seang-Mei SawSingapore Eye Research Institute, Singapore 169856, Singapore.
Kun YeDepartment of Nephrology, The People's Hospital of Guangxi Autonomous Region, Nanning, Guangxi 530021, China.
Richard P EbsteinDepartment of Psychology, National University of Singapore, Singapore 117570, Singapore.
Qin-Kai ChenDepartment of Nephrology, the First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi 330006, China.
Wei ShiDepartment of Nephrology, Guangdong General Hospital, Guangzhou, Guangdong 510080, China.
Soo-Hong ChewDepartment of Economics, National University of Singapore, Singapore 117570, Singapore.
Jian ChenDepartment of Nephrology, Fuzhou General Hospital of Nanjing Military Command, Fuzhou, Fujian 350025, China.
Fu-Ren ZhangShandong Provincial Institute of Dermatology and Venereology, Shandong Academy of Medical Science, Jinan, Shandong 250000, China.
Sheng-Ping LiDepartment of Hepatobiliary Oncology, State Key Laboratory of Oncology in South China, Sun Yat-sen University Cancer Center, Guangzhou, Guangdong 510080, China.
Gang XuDepartment of Nephrology, Tongji Hospital, Tongji Medical College of Huazhong University of science &Technology, Wuhan, Hubei 430030, China.
E Shyong TaiDuke-National University of Singapore Graduate Medical School, Singapore 169857, Singapore.
Li WangDepartment of Nephrology, Sichuan Provincial People's Hospital, Chengdu, Sichuan 610072, China.
Nan ChenDepartment of Nephrology, RuiJin Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200025, China.
Xue-Jun ZhangInstitute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, 230032, China.
Yi-Xin ZengState Key Laboratory of oncology in South China, Sun Yat-sen University Cancer Center, Guangzhou 510080, China.
Hong ZhangRenal Division, Peking University First Hospital, Peking University, Institute of Nephrology, Beijing 100034, China.
Zhi-Hong LiuNational Clinical Research Center of Kidney Diseases, Jinling Hospital, Nanjing University School of Medicine, Nanjing, Jiangsu 210002, China.
Xue-Qing YuDepartment of Nephrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou , Guangdong 510080, China.
Jian-Jun LiuHuman Genetics, Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore 138672, Singapore.
Agency for Science, Technology and Research · SGGenome Institute of Singapore · SGNational University of Singapore · SGSingapore Eye Research Institute · SGSun Yat-sen University · CNAnhui Provincial Hospital · CNNanjing General Hospital of Nanjing Military Command · CNShanghai Jiao Tong University · CNThe First Affiliated Hospital, Sun Yat-sen University · CNAnhui Medical University · CNFirst Affiliated Hospital of Dalian Medical University · CNFirst Affiliated Hospital of GuangXi Medical University · CNFirst Affiliated Hospital of Nanchang University · CNFourth People's Hospital of Sichuan Province · CNFuzhou General Hospital of Nanjing Military Command · CNGuangdong General Hospital · CNNational University Health System · SGNingxia Medical University · CNPeking University · CNShandong First Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

IgA nephropathy (IgAN) is one of the most common primary glomerulonephritis. Previously identified genome-wide association study (GWAS) loci explain only a fraction of disease risk. To identify novel susceptibility loci in Han Chinese, we conduct a four-stage GWAS comprising 8,313 cases and 19,680 controls. Here, we show novel associations at ST6GAL1 on 3q27.3 (rs7634389, odds ratio (OR)=1.13, P=7.27 × 10(-10)), ACCS on 11p11.2 (rs2074038, OR=1.14, P=3.93 × 10(-9)) and ODF1-KLF10 on 8q22.3 (rs2033562, OR=1.13, P=1.41 × 10(-9)), validate a recently reported association at ITGAX-ITGAM on 16p11.2 (rs7190997, OR=1.22, P=2.26 × 10(-19)), and identify three independent signals within the DEFA locus (rs2738058, P=1.15 × 10(-19); rs12716641, P=9.53 × 10(-9); rs9314614, P=4.25 × 10(-9), multivariate association). The risk variants on 3q27.3 and 11p11.2 show strong association with mRNA expression levels in blood cells while allele frequencies of the risk variants within ST6GAL1, ACCS and DEFA correlate with geographical variation in IgAN prevalence. Our findings expand our understanding on IgAN genetic susceptibility and provide novel biological insights into molecular mechanisms underlying IgAN.

Indexed as

AdultAntigens, CDAsian Peoplebeta-D-Galactoside alpha 2-6-SialyltransferaseCase-Control StudiesCD11b AntigenCD11c AntigenChinaDEFICIENS ProteinEarly Growth Response Transcription FactorsFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGlomerulonephritis, IGAHeat-Shock ProteinsHumans1-aminocyclopropanecarboxylate synthaseAntigens, CDbeta-D-Galactoside alpha 2-6-SialyltransferaseCD11b AntigenCD11c AntigenDEFICIENS ProteinEarly Growth Response Transcription FactorsHeat-Shock ProteinsITGAM protein, humanKLF10 protein, humanKruppel-Like Transcription FactorsLyasesODF1 protein, humanSialyltransferasesST6GAL1 protein, human

Identifiers

PMID26028593
PMCPMC4458882
OpenAlexW2265129124

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.