Evidence map›Paper›PMID 26024889›Full record

ArticleBMC genetics2015

Genome-wide association study of platelet aggregation in African Americans.

Rehan Qayyum, Lewis C Becker, Diane M Becker, Nauder Faraday, Lisa R Yanek, Suzanne M Leal, Chad Shaw, Rasika Mathias, Bhoom Suktitipat, Paul F Bray

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 2 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 2 syntheses or guidelines pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  5. Observational
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  13. Using theBrain sciences · 2023
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  14. Review
  15. Preliminary Study of Genome-Wide Association Identified Novel Susceptibility Genes for Hemorheological Indexes in a Chinese Population.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2022
    Article
  16. Transmembrane protease serine 2 (Life science alliance · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Rehan QayyumThe GeneSTAR Research Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA. rqayyum@jhmi.edu.
Lewis C BeckerThe GeneSTAR Research Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA. lbecker@jhmi.edu.
Diane M BeckerThe GeneSTAR Research Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA. dbecker607@aol.com.
Nauder FaradayDepartment of Anesthesiology and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA. nfarada1@jhmi.edu.
Lisa R YanekThe GeneSTAR Research Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA. lryanek@jhmi.edu.
Suzanne M LealMolecular and Human Genetics, Baylor College of Medicine, Houston, Texas, 77030, USA. sleal@bcm.edu.
Chad ShawMolecular and Human Genetics, Baylor College of Medicine, Houston, Texas, 77030, USA. cashaw@bcm.edu.
Rasika MathiasThe GeneSTAR Research Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, 21287, USA. rmathias@jhmi.edu.
Bhoom SuktitipatIntegrative Computational BioScience Center, Department of Biochemistry, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok,, 10700, Thailand. bhoom.suk@mahidol.ac.th.
Paul F BrayDepartment of Medicine, Thomas Jefferson University, Jefferson Medical College, Philadelphia, Pennsylvania, 19107, USA. paul.bray@jefferson.edu.
Johns Hopkins University · USBaylor College of Medicine · USSiriraj Hospital · THThomas Jefferson University · US

Funding

Genotypic Determinants of Aspirin Response in High Risk FamiliesU01HL072518 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BECKER, LEWIS C · 2002 to 2008
$12.8M
Variation in platelet function: the genetics of platelet gene expressionR01HL102482 · NHLBI · UNIVERSITY OF UTAH · PI BRAY, PAUL F. · 2010 to 2018
$4.6M
Genome-Wide Association of Platelet PhenotypesR01HL087698 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BECKER, LEWIS C · 2007 to 2009
$3.8M
Identifying genes regulating platelet reactivityR01HL088458 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI BRAY, PAUL F. · 2007 to 2011
$2.2M
Genetic regulation of racial differences in platelet reactivityR01MD007880 · NIMHD · UNIVERSITY OF UTAH · PI BRAY, PAUL F. · 2013 to 2017
$1.9M
Pharmacogenomics of Anti-platelet ResponseK23HL105897 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI QAYYUM, REHAN · 2010 to 2013
$559k
NHLBI NIH HHS HL88458NHLBI NIH HHS K23 HL105897NHLBI NIH HHS K23HL105897NHLBI NIH HHS R01 HL087698NHLBI NIH HHS R01 HL087698-01NHLBI NIH HHS R01 HL088458NHLBI NIH HHS R01 HL102482NHLBI NIH HHS U01 HL072518NHLBI NIH HHS U01 HL72518NIMHD NIH HHS R01 MD007880
6 · The paper itself

Abstract

backgroundWe have previously shown that platelet aggregation has higher heritability in African Americans than European Americans. However, a genome-wide association study (GWAS) of platelet aggregation in African Americans has not been reported. We measured platelet aggregation in response to arachidonic acid, ADP, collagen, or epinephrine by optical aggregometry. The discovery cohort was 825 African Americans from the GeneSTAR study. Two replication cohorts were used: 119 African Americans from the Platelet Genes and Physiology Study and 1221 European Americans from GeneSTAR. Genotyping was conducted with Illumina 1 M arrays. For each cohort, age- and sex-adjusted linear mixed models were used to test for association between each SNP and each phenotype under an additive model.

resultsSix SNPs were significantly associated with platelet aggregation (P<5×10(-8)) in the discovery sample. Of these, three SNPs in three different loci were confirmed: 1) rs12041331, in PEAR1 (platelet endothelial aggregation receptor 1), replicated in both African and European Americans for collagen- and epinephrine-induced aggregation, and in European Americans for ADP-induced aggregation; 2) rs11202221, in BMPR1A (bone morphogenetic protein receptor type1A), replicated in African Americans for ADP-induced aggregation; and 3) rs6566765 replicated in European Americans for ADP-induced aggregation. The rs11202221 and rs6566765 associations with agonist-induced platelet aggregation are novel.

conclusionsIn this first GWAS of agonist-induced platelet aggregation in African Americans, we discovered and replicated, novel associations of two variants with ADP-induced aggregation, and confirmed the association of a PEAR1 variant with multi-agonist-induced aggregation. Further study of these genes may provide novel insights into platelet biology.

Indexed as

Genome-Wide Association StudyAdenosine DiphosphateAdultAllelesArachidonic AcidBlack or African AmericanCollagenEpinephrineFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansLinkage DisequilibriumMaleMiddle AgedPlatelet AggregationAdenosine DiphosphateArachidonic AcidCollagenEpinephrine

Identifiers

PMID26024889
PMCPMC4448541
OpenAlexW1604072917

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.