Evidence map›Paper›PMID 26024230›Full record

ArticlePLoS genetics2015

Genetic mechanism of human neutrophil antigen 2 deficiency and expression variations.

Yunfang Li, David C Mair, Randy M Schuller, Ling Li, Jianming Wu

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. TheInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Review
  8. Phenotyping and Genotyping of HNA: Prevalence, Risk of Alloimmunization, and HNA Incompatibilities in Indians.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2023
    Article
  9. Article
  10. Article
  11. Novel HumanFrontiers in immunology · 2022
    Article
  12. Article
  13. Multicenter Study on Differential Human Neutrophil Antigen 2 Expression and Underlying Molecular Mechanisms.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2020
    Article
  14. Article
  15. Review
  16. Molecular Genetics of the Human Neutrophil Antigens.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2018
    Review
  17. Towards a Regional Registry of Extended Typed Blood Donors: Molecular Typing for Blood Group, Platelet and Granulocyte Antigens.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2018
    Article
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  19. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yunfang LiDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota, United States of America.
David C MairAmerican Red Cross, North Central Blood Services, National Neutrophil Reference Laboratory, Saint Paul, Minnesota, United States of America.
Randy M SchullerAmerican Red Cross, North Central Blood Services, National Neutrophil Reference Laboratory, Saint Paul, Minnesota, United States of America.
Ling LiDepartment of Clinical and Experimental Pharmacology, University of Minnesota, Minneapolis, Minnesota, United States of America.
Jianming WuDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, Minnesota, United States of America; Department of Medicine, University of Minnesota, Minneapolis, Minnesota, United States of America.
University of Minnesota · USAmerican Red Cross · US

Funding

Human immunoglobulin Fc receptor functions in sarcoidosisR21HL117652 · NHLBI · UNIVERSITY OF MINNESOTA · PI WU, JIANMING · 2013 to 2014
$226k
NHLBI NIH HHS R21 HL117652NHLBI NIH HHS R21HL117652
6 · The paper itself

Abstract

Human neutrophil antigen 2 (HNA-2) deficiency is a common phenotype as 3-5% humans do not express HNA-2. HNA-2 is coded by CD177 gene that associates with human myeloproliferative disorders. HNA-2 deficient individuals are prone to produce HNA-2 alloantibodies that cause a number of disorders including transfusion-related acute lung injury and immune neutropenia. In addition, the percentages of HNA-2 positive neutrophils vary significantly among individuals and HNA-2 expression variations play a role in human diseases such as myelodysplastic syndrome, chronic myelogenous leukemia, and gastric cancer. The underlying genetic mechanism of HNA-2 deficiency and expression variations has remained a mystery. In this study, we identified a novel CD177 nonsense single nucleotide polymorphism (SNP 829A>T) that creates a stop codon within the CD177 coding region. We found that all 829TT homozygous individuals were HNA-2 deficient. In addition, the SNP 829A>T genotypes were significantly associated with the percentage of HNA-2 positive neutrophils. Transfection experiments confirmed that HNA-2 expression was absent on cells expressing the CD177 SNP 829T allele. Our data clearly demonstrate that the CD177 SNP 829A>T is the primary genetic determinant for HNA-2 deficiency and expression variations. The mechanistic delineation of HNA-2 genetics will enable the development of genetic tests for diagnosis and prognosis of HNA-2-related human diseases.

Indexed as

Genetic Association StudiesGenetic Diseases, InbornAdultAgedAged, 80 and overFemaleGene Expression RegulationGenotypeGPI-Linked ProteinsHealthy VolunteersHeterozygoteHumansIsoantigensMaleMiddle AgedNeutrophilsCD177 protein, humanGPI-Linked ProteinsIsoantigensReceptors, Cell Surface

Identifiers

PMID26024230
PMCPMC4449163
OpenAlexW376963578

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.