ArticleThe ISME journal2016
Fungal invasion of the rhizosphere microbiome.
Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.
What it found
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Who cites it
141 citing papers in PubMed.
- Towards an Omics-Guided Framework for Microbial Biological Control of Fungal and Oomycete Diseases inInternational journal of molecular sciences · 2026Review
- Bacterial inoculation drives microbiome-mediated resistance to a soil-borne pathogen in wheat.NPJ biofilms and microbiomes · 2026Article
- Ecological and genomic dynamics of the soil microbiome under sustained pressure from Phytophthora nicotianae, the causal agent of tobacco black shank disease.BMC microbiology · 2026Article
- Plant Development Shapes the Rhizosphere Microbiota Assembly ofMicroorganisms · 2026Article
- Decoding endophytic microbiome dynamics: engineering antagonistic synthetic consortia for targeted fusarium suppression in monoculture regimes.Horticulture research · 2026Article
- Trichoderma combined with palm kernel shell biochar promotes root health and rhizosphere biodiversity in young oil palm seedlings infected withFrontiers in microbiomes · 2026Article
- Harnessing rhizosphere microbes: the synergistic roles of PGPR and AMF in sustainable tomato production under stress.Frontiers in microbiology · 2026Review
- Metagenomic insights into the rhizosphere microbiome dysbiosis associated with tobacco bacterial wilt.Frontiers in microbiology · 2026Article
- Orchard management alters citrus root and rhizosphere microbiomes with functional consequences for plant performance.ISME communications · 2026Article
- Microbial biocontrol agents and the rhizosphere microbiome: integrating ecological function and climate resilience in sustainable agriculture.Frontiers in microbiology · 2026Review
- Next-generation perspectives on microbially synthesized siderophores: molecular engineering, multi-omics insights, and applications for smart climate-resilient crops.World journal of microbiology & biotechnology · 2025Review
- Exploring soil microbial and plant parasitic nematode communities involved in the apple replant disease complex in Nova Scotia.Scientific reports · 2025Article
- Soil microbial diversity: A key factor in pathogen suppression and inoculant performance.Geoderma · 2025Article
- Herbicides Have Minimal and Variable Effects on the Structure and Function of Bacterial Communities in Agricultural Soils.Environmental microbiology · 2025Article
- Rapid and sustained differentiation of disease-suppressive phyllosphere microbiomes in tomato following experimental microbiome selection.Environmental microbiome · 2025Article
- Molecular Tactics of Biocontrol Fungi to Hack Plant Immunity for Successful Host Colonization-A Focus onMicroorganisms · 2025Review
- Root Exudates Mediate the Production of Reactive Oxygen Species in Rhizosphere Soil: Formation Mechanisms and Ecological Effects.Plants (Basel, Switzerland) · 2025Review
- Analysis of Midgut Bacterial Communities in Larvae and Adult Mosquitoes ofMicroorganisms · 2025Article
- Article
- Longitudinal metagenomics reveals continuous restructuring of soil pathobiome under persistentFrontiers in plant science · 2025Article
81 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The rhizosphere is the infection court where soil-borne pathogens establish a parasitic relationship with the plant. To infect root tissue, pathogens have to compete with members of the rhizosphere microbiome for available nutrients and microsites. In disease-suppressive soils, pathogens are strongly restricted in growth by the activities of specific rhizosphere microorganisms. Here, we sequenced metagenomic DNA and RNA of the rhizosphere microbiome of sugar beet seedlings grown in a soil suppressive to the fungal pathogen Rhizoctonia solani. rRNA-based analyses showed that Oxalobacteraceae, Burkholderiaceae, Sphingobacteriaceae and Sphingomonadaceae were significantly more abundant in the rhizosphere upon fungal invasion. Metatranscriptomics revealed that stress-related genes (ppGpp metabolism and oxidative stress) were upregulated in these bacterial families. We postulate that the invading pathogenic fungus induces, directly or via the plant, stress responses in the rhizobacterial community that lead to shifts in microbiome composition and to activation of antagonistic traits that restrict pathogen infection.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.