Evidence map›Paper›PMID 26022247›Full record

ArticleDiagnostic pathology2015

Allelic imbalance at the HER2/TOP2A locus in breast cancer.

Cornelis J J Huijsmans, Adriaan J C van den Brule, Henny Rigter, Jeroen Poodt, Johannes C van der Linden, Paul H M Savelkoul, Mirrian Hilbink, Mirjam H A Hermans

Open access · goldAbstract read
In one paragraph

Article in Diagnostic pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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  5. Assessment ofAging · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Cornelis J J HuijsmansLaboratory of Molecular Diagnostics, Jeroen Bosch Hospital, PO Box 90153, 5200 ME, 's-Hertogenbosch, The Netherlands. r.huysmans@jbz.nl.
Adriaan J C van den BruleLaboratory of Molecular Diagnostics, Jeroen Bosch Hospital, PO Box 90153, 5200 ME, 's-Hertogenbosch, The Netherlands. a.v.d.brule@jbz.nl.
Henny RigterLaboratory of Pathology, Jeroen Bosch Hospital, PO Box 90153, 5223 GZ, 's-Hertogenbosch, The Netherlands. h.rigter@jbz.nl.
Jeroen PoodtLaboratory of Molecular Diagnostics, Jeroen Bosch Hospital, PO Box 90153, 5200 ME, 's-Hertogenbosch, The Netherlands. j.poodt@labhelp.nl.
Johannes C van der LindenLaboratory of Pathology, Jeroen Bosch Hospital, PO Box 90153, 5223 GZ, 's-Hertogenbosch, The Netherlands. h.v.d.linden@jbz.nl.
Paul H M SavelkoulMedical Microbiology and Infection Control, VU University Medical Center, PO Box 7057, 1007 MB, Amsterdam, The Netherlands. paul.savelkoul@mumc.nl.
Mirrian HilbinkJeroen Bosch Academy, Jeroen Bosch Hospital, PO Box 90153, 5223 GZ, 's-Hertogenbosch, The Netherlands. m.hilbink@jbz.nl.
Mirjam H A HermansLaboratory of Molecular Diagnostics, Jeroen Bosch Hospital, PO Box 90153, 5200 ME, 's-Hertogenbosch, The Netherlands. m.hermans@jbz.nl.
Jeroen Bosch Ziekenhuis · NLAmsterdam UMC Location VUmc · NLRobert Bosch (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBreast cancer is a heterogeneous disease with various histological features and molecular markers. These are utilized for the prediction of clinical outcome and therapeutic decision making. In addition to well established markers such as HER2 overexpression and estrogen and progesterone receptor (ER and PR) status, chromosomal instability is evolving as an important hallmark of cancers. The HER2/TOP2A locus is of great importance in breast cancer. The copy number variability at this locus has been proposed to be a marker for the degree of chromosomal instability. We therefore developed a Single Nucleotide Polymorphism (SNP) assay to evaluate allelic imbalance at the HER2/TOP2A locus in three different entities of primary breast tumors.

methodsEleven SNPs were carefully selected and detected by real time PCR using DNA extracted from paired (histologically normal and tumor) paraffin-embedded tissues. Primary breast tumors of 44 patients were included, 15 tumors with HER2 overexpression, 16 triple negative tumors, defined by the absence of HER2 overexpression and a negative ER and PR status and 13 ER and PR positive tumors without HER2 overexpression. As controls, histologically normal breast tissues from 10 patients with no breast tumor were included.

resultsAllelic imbalance was observed in 13/15 (87 %) HER2 positive tumors, the remaining 2 being inconclusive. Of the 16 triple negative tumors, 12 (75 %) displayed instability, 3 (19 %) displayed no instability, and 1 was inconclusive. Of the 13 hormone receptor positive tumors, 5 (38 %) displayed allelic imbalance, while 8 did not.

conclusionsWe conclude that the SNP assay is suitable for rapid testing of allelic (im)balance at the HER2/TOP2A locus using paraffin-embedded tissues. Based on allelic imbalance at this locus, both triple negative and ER and PR positive breast tumors can be subcategorized. The clinical relevance of the allelic (im)balance status at the HER2/TOP2A locus in breast cancer is subject of future study. VIRTUAL SLIDES: The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/2086062232155220.

Indexed as

Allelic ImbalancePolymorphism, Single NucleotideAdultAgedAntigens, NeoplasmBiomarkers, TumorBiopsyBreast NeoplasmsDNA-Binding ProteinsDNA Topoisomerases, Type IIErb-b2 Receptor Tyrosine KinasesFemaleGenetic Predisposition to DiseaseHumansImmunohistochemistryIn Situ HybridizationAntigens, NeoplasmBiomarkers, TumorDNA-Binding ProteinsDNA Topoisomerases, Type IIERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesPoly-ADP-Ribose Binding ProteinsReceptors, EstrogenReceptors, ProgesteroneTOP2A protein, human

Identifiers

PMID26022247
PMCPMC4448206
OpenAlexW1599227492

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.