Evidence map›Paper›PMID 26021216›Full record

ArticleNeuroImage2015

Comparison of PCA approaches for very large group ICA.

Vince D Calhoun, Rogers F Silva, Tülay Adalı, Srinivas Rachakonda

Abstract readComparative Study
In one paragraph

Article in NeuroImage, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Functional Neuroimaging in the New Era of Big Data.Genomics, proteomics & bioinformatics · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Memory Efficient PCA Methods for Large Group ICA.Frontiers in neuroscience · 2016
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Vince D CalhounThe Mind Research Network & LBERI, Albuquerque, NM 87106, USA; Dept. of ECE, The University of New Mexico, Albuquerque, NM 87106, USA. Electronic address: vcalhoun@unm.edu.
Rogers F SilvaThe Mind Research Network & LBERI, Albuquerque, NM 87106, USA; Dept. of ECE, The University of New Mexico, Albuquerque, NM 87106, USA.
Tülay AdalıDept. of CSEE, University of Maryland, Baltimore County, Baltimore, MD 21250, USA.
Srinivas RachakondaThe Mind Research Network & LBERI, Albuquerque, NM 87106, USA.

Funding

Transcranial Direct Current Stimulation for Treatment of Auditory Verbal HalluciP20GM103472 · NIGMS · THE MIND RESEARCH NETWORK · PI ABBOTT, CHRISTOPHER C · 2012 to 2017
$14.3M
Multivariate methods for identifying multitask/multimodal brain imaging biomarkersR01EB006841 · NIBIB · THE MIND RESEARCH NETWORK · PI VINCE D CALHOUN, Sergey Plis · 2007 to 2026
$9.8M
COINSTAC: Decentralized, Scalable Analysis of Loosely Coupled DataR01DA040487 · NIDA · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D, PLIS, SERGEY · 2015 to 2024
$7.1M
Mining the Genomewide Scan: Genetic Profiles of Structural Loss in Schizophrenia: AD/ADRD supplementR01MH094524 · NIMH · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D, TURNER, JESS · 2012 to 2021
$6.3M
Informed Data-Driven Fusion of Behavior, Brain Function, and GenesR01EB005846 · NIBIB · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D · 2005 to 2016
$5.5M
Unified multivariate data-driven solutions for static and dynamic brain connectivityR01EB020407 · NIBIB · THE MIND RESEARCH NETWORK · PI ADALI, TULAY, CALHOUN, VINCE D · 2015 to 2018
$2.7M
Integration of brain imaging with genomic and epigenomic dataR01MH104680 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI CALHOUN, VINCE D, DENG, HONG-WEN · 2014 to 2017
$2.1M
NIBIB NIH HHS 1R01EB006841NIBIB NIH HHS R01 EB005846NIBIB NIH HHS R01EB005846NIBIB NIH HHS R01 EB006841NIBIB NIH HHS R01 EB020407NIDA NIH HHS R01 DA040487NIGMS NIH HHS P20 GM103472NIGMS NIH HHS P20GM103472NIMH NIH HHS R01 MH094524NIMH NIH HHS R01 MH104680
6 · The paper itself

Abstract

Large data sets are becoming more common in fMRI and, with the advent of faster pulse sequences, memory efficient strategies for data reduction via principal component analysis (PCA) turn out to be extremely useful, especially for widely used approaches like group independent component analysis (ICA). In this commentary, we discuss results and limitations from a recent paper on the topic and attempt to provide a more complete perspective on available approaches as well as discussing various issues to consider related to PCA for very large group ICA. We also provide an analysis of computation time, memory use, and number of dataloads for a variety of approaches under multiple scenarios of small and extremely large data sets.

Indexed as

BrainBrain MappingHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingPrincipal Component AnalysisIndependent component analysisMemoryPrincipal component analysisRAM

Identifiers

PMID26021216
PMCPMC4554805

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.