Evidence map›Paper›PMID 26020919›Full record

ArticlePLoS genetics2015

Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha.

Hirotaka Kato, Kimitsune Ishizaki, Masaru Kouno, Makoto Shirakawa, John L Bowman, Ryuichi Nishihama, Takayuki Kohchi

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
32.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 190 citations in OpenAlex.

  1. Review
  2. Review
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  4. Laser ablation microscopy reveals apical notch, apical dominance, and meristem regeneration dynamics inProceedings of the National Academy of Sciences of the United States of America · 2026
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  5. Mutational analyses of an instability domain reveal its conserved role in the regulation of class-B ARF levels inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. A conserved ARF-DNA interface underlies auxin-triggered transcriptional response.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Auxin Orchestrates Germ Cell Specification inInternational journal of molecular sciences · 2025
    Review
  15. Article
  16. Origin and evolution of auxin-mediated acid growth.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Review
  19. Article
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Hirotaka KatoGraduate School of Biostudies, Kyoto University, Kyoto, Japan.
Kimitsune IshizakiGraduate School of Biostudies, Kyoto University, Kyoto, Japan; Graduate School of Science, Kobe University, Kobe, Japan.
Masaru KounoGraduate School of Biostudies, Kyoto University, Kyoto, Japan.
Makoto ShirakawaGraduate School of Biostudies, Kyoto University, Kyoto, Japan.
John L BowmanSchool of Biological Sciences, Monash University, Melbourne, Victoria, Australia; Section of Plant Biology, University of California, Davis, Davis, California, United States of America.
Ryuichi NishihamaGraduate School of Biostudies, Kyoto University, Kyoto, Japan.
Takayuki KohchiGraduate School of Biostudies, Kyoto University, Kyoto, Japan.
Kyoto University · JPMonash University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant hormone auxin regulates many aspects of plant growth and development. Recent progress in Arabidopsis provided a scheme that auxin receptors, TIR1/AFBs, target transcriptional co-repressors, AUX/IAAs, for degradation, allowing ARFs to regulate transcription of auxin responsive genes. The mechanism of auxin-mediated transcriptional regulation is considered to have evolved around the time plants adapted to land. However, little is known about the role of auxin-mediated transcription in basal land plant lineages. We focused on the liverwort Marchantia polymorpha, which belongs to the earliest diverging lineage of land plants. M. polymorpha has only a single TIR1/AFB (MpTIR1), a single AUX/IAA (MpIAA), and three ARFs (MpARF1, MpARF2, and MpARF3) in the genome. Expression of a dominant allele of MpIAA with mutations in its putative degron sequence conferred an auxin resistant phenotype and repressed auxin-dependent expression of the auxin response reporter proGH3:GUS. We next established a system for DEX-inducible auxin-response repression by expressing the putatively stabilized MpIAA protein fused with the glucocorticoid receptor domain (MpIAA(mDII)-GR). Repression of auxin responses in (pro)MpIAA:MpIAA(mDII)-GR plants caused severe defects in various developmental processes, including gemmaling development, dorsiventrality, organogenesis, and tropic responses. Transient transactivation assays showed that the three MpARFs had different transcriptional activities, each corresponding to their phylogenetic classifications. Moreover, MpIAA and MpARF proteins interacted with each other with different affinities. This study provides evidence that pleiotropic auxin responses can be achieved by a minimal set of auxin signaling factors and suggests that the transcriptional regulation mediated by TIR1/AFB, AUX/IAA, and three types of ARFs might have been a key invention to establish body plans of land plants. We propose that M. polymorpha is a good model to investigate the principles and the evolution of auxin-mediated transcriptional regulation and its roles in land plant morphogenesis.

Indexed as

Evolution, MolecularTranscription, GeneticArabidopsisArabidopsis ProteinsDNA-Binding ProteinsF-Box ProteinsGene Expression Regulation, PlantIndoleacetic AcidsLife Cycle StagesMarchantiaMolecular Sequence DataMorphogenesisMutationNuclear ProteinsPhylogenyPlants, Genetically ModifiedArabidopsis ProteinsAUX1 protein, ArabidopsisDNA-Binding ProteinsF-Box ProteinsIAA1 protein, ArabidopsisIndoleacetic AcidsNuclear ProteinsReceptors, Cell SurfaceTIR1 protein, Arabidopsis

Identifiers

PMID26020919
PMCPMC4447296
OpenAlexW1539702078

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.