ArticlePeerJ2015
Swabs to genomes: a comprehensive workflow.
Article in PeerJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed.
- Screening Salamanders for Symbionts.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience.Frontiers in microbiology · 2020Article
- Article
- Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina.PloS one · 2020Article
- Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment.PloS one · 2019Article
- Characterization of the Mycobiome of the Seagrass,Frontiers in microbiology · 2019Article
- Antifungal Bacteria on Woodland Salamander Skin Exhibit High Taxonomic Diversity and Geographic Variability.Applied and environmental microbiology · 2017Article
- Draft Genome Sequences ofGenome announcements · 2017Article
- Draft Genome Sequence of a Multidrug-Resistant Strain ofGenome announcements · 2017Article
- Draft genome sequences of eight bacteria isolated from the indoor environment:Standards in genomic sciences · 2017Article
- Functional Annotations of Paralogs: A Blessing and a Curse.Life (Basel, Switzerland) · 2016Article
- Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos.Genome announcements · 2016Article
- Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment.Genome announcements · 2016Article
- Draft Genome Sequences of Two Vibrio splendidus Strains, Isolated from Seagrass Sediment.Genome announcements · 2016Article
- Growth of 48 built environment bacterial isolates on board the International Space Station (ISS).PeerJ · 2016Article
- Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes).Genome announcements · 2015Article
- Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria).Genome announcements · 2015Article
- Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum Proteobacteria).Genome announcements · 2015Article
- Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria).Genome announcements · 2015Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become much easier for research labs with access to standard molecular biology and computational tools. However, there are a confusing variety of options available for DNA library preparation and sequencing, and inexperience with bioinformatics can pose a significant barrier to entry for many who may be interested in microbial genomics. The objective of the present study was to design, test, troubleshoot, and publish a simple, comprehensive workflow from the collection of an environmental sample (a swab) to a published microbial genome; empowering even a lab or classroom with limited resources and bioinformatics experience to perform it.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.