Evidence map›Paper›PMID 26019300›Full record

ArticlePlant physiology2015

Germination Potential of Dormant and Nondormant Arabidopsis Seeds Is Driven by Distinct Recruitment of Messenger RNAs to Polysomes.

Isabelle Basbouss-Serhal, Ludivine Soubigou-Taconnat, Christophe Bailly, Juliette Leymarie

Abstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Control of seed-to-seedling transition by an upstream open reading frame inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Legume-rhizobia symbiosis: Translatome analysis.Genetics and molecular biology · 2024
    Article
  9. A Travel through Landscapes of Seed Dormancy.Plants (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Dynamics of Protein Phosphorylation duringInternational journal of molecular sciences · 2022
    Article
  12. The Histone Chaperone HIRA Is a Positive Regulator of Seed Germination.International journal of molecular sciences · 2021
    Article
  13. Article
  14. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
  15. Article
  16. Review
  17. Article
  18. Translational regulation contributes to the elevated COThe Plant journal : for cell and molecular biology · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Isabelle Basbouss-SerhalSorbonne Universités, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, F-75005 Paris, France (I.B.-S., C.B., J.L.);Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., C.B., J.L.); andUnité de Recherche en Génomique Végétale, Unité Mixte de Recherche 1165, Institut National de la Recherche Agronomique, 91057 Evry, France (L.S.-T.).
Ludivine Soubigou-TaconnatSorbonne Universités, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, F-75005 Paris, France (I.B.-S., C.B., J.L.);Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., C.B., J.L.); andUnité de Recherche en Génomique Végétale, Unité Mixte de Recherche 1165, Institut National de la Recherche Agronomique, 91057 Evry, France (L.S.-T.).
Christophe BaillySorbonne Universités, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, F-75005 Paris, France (I.B.-S., C.B., J.L.);Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., C.B., J.L.); andUnité de Recherche en Génomique Végétale, Unité Mixte de Recherche 1165, Institut National de la Recherche Agronomique, 91057 Evry, France (L.S.-T.) christophe.bailly@upmc.fr.
Juliette LeymarieSorbonne Universités, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, F-75005 Paris, France (I.B.-S., C.B., J.L.);Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., C.B., J.L.); andUnité de Recherche en Génomique Végétale, Unité Mixte de Recherche 1165, Institut National de la Recherche Agronomique, 91057 Evry, France (L.S.-T.).

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dormancy is a complex evolutionary trait that temporally prevents seed germination, thus allowing seedling growth at a favorable season. High-throughput analyses of transcriptomes have led to significant progress in understanding the molecular regulation of this process, but the role of posttranscriptional mechanisms has received little attention. In this work, we have studied the dynamics of messenger RNA association with polysomes and compared the transcriptome with the translatome in dormant and nondormant seeds of Arabidopsis (Arabidopsis thaliana) during their imbibition at 25 °C in darkness, a temperature preventing germination of dormant seeds only. DNA microarray analysis revealed that 4,670 and 7,028 transcripts were differentially abundant in dormant and nondormant seeds in the transcriptome and the translatome, respectively. We show that there is no correlation between transcriptome and translatome and that germination regulation is also largely translational, implying a selective and dynamic recruitment of messenger RNAs to polysomes in both dormant and nondormant seeds. The study of 5' untranslated region features revealed that GC content and the number of upstream open reading frames could play a role in selective translation occurring during germination. Gene Ontology clustering showed that the functions of polysome-associated transcripts differed between dormant and nondormant seeds and revealed actors in seed dormancy and germination. In conclusion, our results demonstrate the essential role of selective polysome loading in this biological process.

Indexed as

5' Untranslated RegionsArabidopsisBase SequenceGene Expression Regulation, PlantGene OntologyGerminationModels, BiologicalMolecular Sequence DataOpen Reading FramesPlant DormancyPolyribosomesProtein BiosynthesisRNA, MessengerSeedsTranscriptome5' Untranslated RegionsRNA, Messenger

Identifiers

PMID26019300
PMCPMC4741348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.