Evidence map›Paper›PMID 26019164›Full record

ArticleGenome biology and evolution2015

Complete Genome Sequence and Transcriptomic Analysis of the Novel Pathogen Elizabethkingia anophelis in Response to Oxidative Stress.

Yingying Li, Yang Liu, Su Chuen Chew, Martin Tay, May Margarette Santillan Salido, Jeanette Teo, Federico M Lauro, Michael Givskov, Liang Yang

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

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  12. Microorganisms · 2019
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  13. Bacterial Communities and Virulence Associated with Pine Wood NematodeInternational journal of molecular sciences · 2019
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  14. mSphere · 2019
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  15. Article
  16. Frontiers in microbiology · 2017
    Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Yingying LiSchool of Biological Sciences, Nanyang Technological University, Singapore.
Yang LiuSingapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.
Su Chuen ChewSingapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore Interdisciplinary Graduate School, Nanyang Technological University, Singapore.
Martin TaySingapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.
May Margarette Santillan SalidoSingapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore.
Jeanette TeoMicrobiology Unit, Department of Laboratory Medicine, National University Hospital, Singapore.
Federico M LauroSingapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
Michael GivskovSingapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore Costerton Biofilm Center, Department of International Health, Immunology and Microbiology, University of Copenhagen, Denmark.
Liang YangSchool of Biological Sciences, Nanyang Technological University, Singapore Singapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore yangliang@ntu.edu.sg.
Nanyang Technological University · SGSingapore Centre for Environmental Life Sciences Engineering · SGNational University Hospital · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Elizabethkingia anophelis is an emerging pathogen that can cause life-threatening infections in neonates, severely immunocompromised and postoperative patients. The lack of genomic information on E. anophelis hinders our understanding of its mechanisms of pathogenesis. Here, we report the first complete genome sequence of E. anophelis NUHP1 and assess its response to oxidative stress. Elizabethkingia anophelis NUHP1 has a circular genome of 4,369,828 base pairs and 4,141 predicted coding sequences. Sequence analysis indicates that E. anophelis has well-developed systems for scavenging iron and stress response. Many putative virulence factors and antibiotic resistance genes were identified, underscoring potential host-pathogen interactions and antibiotic resistance. RNA-sequencing-based transcriptome profiling indicates that expressions of genes involved in synthesis of an yersiniabactin-like iron siderophore and heme utilization are highly induced as a protective mechanism toward oxidative stress caused by hydrogen peroxide treatment. Chrome azurol sulfonate assay verified that siderophore production of E. anophelis is increased in the presence of oxidative stress. We further showed that hemoglobin facilitates the growth, hydrogen peroxide tolerance, cell attachment, and biofilm formation of E. anophelis NUHP1. Our study suggests that siderophore production and heme uptake pathways might play essential roles in stress response and virulence of the emerging pathogen E. anophelis.

Indexed as

Genome, BacterialBiofilmsDrug Resistance, BacterialFlavobacteriaceaeGene Expression ProfilingGenomicsHemoglobinsMolecular Sequence DataOxidative StressSiderophoresVirulenceHemoglobinsSiderophoresElizabethkingia anophelisgenomehemeiron siderophoreoxidative stress responsetranscriptome

Identifiers

PMID26019164
PMCPMC4494045
OpenAlexW2259429962

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.