Evidence map›Paper›PMID 26018465›Full record

ArticleEuropean journal of immunology2015

The presence of prolines in the flanking region of an immunodominant HIV-2 gag epitope influences the quality and quantity of the epitope generated.

Sabelle Jallow, Aleksandra Leligdowicz, Holger B Kramer, Clayton Onyango, Matthew Cotten, Cynthia Wright, Hilton C Whittle, Andrew McMichael, Tao Dong, Benedikt M Kessler and 1 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in European journal of immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Sabelle JallowRadcliffe Department of Medicine, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Headington, Oxford, UK.
Aleksandra LeligdowiczInterdepartmental Division of Critical Care Medicine, University of Toronto, Canada.
Holger B KramerDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK.
Clayton OnyangoMedical Research Council Unit, Fajara, The Gambia.
Matthew CottenWellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Cynthia WrightNuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, UK.
Hilton C WhittleMedical Research Council Unit, Fajara, The Gambia.
Andrew McMichaelRadcliffe Department of Medicine, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Headington, Oxford, UK.
Tao DongRadcliffe Department of Medicine, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Headington, Oxford, UK.
Benedikt M KesslerNuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, UK.
Sarah L Rowland-JonesNuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, UK.
University of Oxford · GBJohn Radcliffe Hospital · GBMRC Unit the Gambia · GMNuffield Orthopaedic Centre · GBMuscular Dystrophy Canada · CAWellcome Sanger Institute · GB

Funding

Medical Research Council G0600520Medical Research Council G0801751Medical Research Council G1001046Medical Research Council MC_U190085856Medical Research Council MR/L018942/1Wellcome Trust 084655
6 · The paper itself

Abstract

Both the recognition of HIV-infected cells and the immunogenicity of candidate CTL vaccines depend on the presentation of a peptide epitope at the cell surface, which in turn depends on intracellular antigen processing. Differential antigen processing maybe responsible for the differences in both the quality and the quantity of epitopes produced, influencing the immunodominance hierarchy of viral epitopes. Previously, we showed that the magnitude of the HIV-2 gag-specific T-cell response is inversely correlated with plasma viral load, particularly when responses are directed against an epitope, 165 DRFYKSLRA173 , within the highly conserved Major Homology Region of gag-p26. We also showed that the presence of three proline residues, at positions 119, 159 and 178 of gag-p26, was significantly correlated with low viral load. Since this proline motif was also associated with stronger gag-specific CTL responses, we investigated the impact of these prolines on proteasomal processing of the protective 165 DRFYKSLRA173 epitope. Our data demonstrate that the 165 DRFYKSLRA173 epitope is most efficiently processed from precursors that contain two flanking proline residues, found naturally in low viral-load patients. Superior antigen processing and enhanced presentation may account for the link between infection with HIV-2 encoding the "PPP-gag" sequence and both strong gag-specific CTL responses as well as lower viral load.

Indexed as

Immunity, CellularAmino Acid MotifsEpitopes, T-LymphocyteFemalegag Gene Products, Human Immunodeficiency VirusHIV-2HIV InfectionsHumansMaleT-LymphocytesViral LoadEpitopes, T-Lymphocytegag Gene Products, Human Immunodeficiency VirusAntigen processingCTL epitopesDRFYKSLRAGag p26HIV-2

Identifiers

PMID26018465
PMCPMC4832300
OpenAlexW2161980622

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.