Evidence map›Paper›PMID 26017895›Full record

ArticleGenome biology2015

Sex chromosome-to-autosome transposition events counter Y-chromosome gene loss in mammals.

Jennifer F Hughes, Helen Skaletsky, Natalia Koutseva, Tatyana Pyntikova, David C Page

Abstract read
In one paragraph

Article in Genome biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  5. Article
  6. Specialized Ribosomes in Health and Disease.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Animals : an open access journal from MDPI · 2022
    Article
  9. Article
  10. Article
  11. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. A strategic research alliance: Turner syndrome and sex differences.American journal of medical genetics. Part C, Seminars in medical genetics · 2019
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Jennifer F HughesWhitehead Institute, Cambridge, MA, 02142, USA. jhughes@wi.mit.edu.
Helen SkaletskyWhitehead Institute, Cambridge, MA, 02142, USA. skaletsky@wi.mit.edu.
Natalia KoutsevaWhitehead Institute, Cambridge, MA, 02142, USA. koutseva@wi.mit.edu.
Tatyana PyntikovaWhitehead Institute, Cambridge, MA, 02142, USA. pyntikova@wi.mit.edu.
David C PageWhitehead Institute, Cambridge, MA, 02142, USA. dcpage@wi.mit.edu.

Funding

MAPPING THE HUMAN Y CHROMOSOMER01HG000257 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PAGE, DAVID C. · 1991 to 2013
$15.3M
Making structurally complex genomic regions accessibleR01HG007852 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PAGE, DAVID C. · 2015 to 2017
$2.7M
Beyond the reproductive tract: The future of Y chromosome researchU01HG007587 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI MUENKE, MAXIMILIAN, PAGE, DAVID C. · 2015 to 2017
$1.4M
Howard Hughes Medical InstituteNHGRI NIH HHS HG000257NHGRI NIH HHS R01 HG000257NHGRI NIH HHS R01 HG007852NHGRI NIH HHS U01 HG007587
6 · The paper itself

Abstract

backgroundAlthough the mammalian X and Y chromosomes evolved from a single pair of autosomes, they are highly differentiated: the Y chromosome is dramatically smaller than the X and has lost most of its genes. The surviving genes are a specialized set with extraordinary evolutionary longevity. Most mammalian lineages have experienced delayed, or relatively recent, loss of at least one conserved Y-linked gene. An extreme example of this phenomenon is in the Japanese spiny rat, where the Y chromosome has disappeared altogether. In this species, many Y-linked genes were rescued by transposition to new genomic locations, but until our work presented here, this has been considered an isolated case.

resultsWe describe eight cases of genes that have relocated to autosomes in mammalian lineages where the corresponding Y-linked gene has been lost. These gene transpositions originated from either the X or Y chromosomes, and are observed in diverse mammalian lineages: occurring at least once in marsupials, apes, and cattle, and at least twice in rodents and marmoset. For two genes--EIF1AX/Y and RPS4X/Y--transposition to autosomes occurred independently in three distinct lineages.

conclusionsRescue of Y-linked gene loss through transposition to autosomes has previously been reported for a single isolated rodent species. However, our findings indicate that this compensatory mechanism is widespread among mammalian species. Thus, Y-linked gene loss emerges as an additional driver of gene transposition from the sex chromosomes, a phenomenon thought to be driven primarily by meiotic sex chromosome inactivation.

Indexed as

Gene DeletionSex Chromosome AberrationsTranslocation, GeneticAnimalsCattleEukaryotic Initiation Factor-1GenomicsHumansIn Situ Hybridization, FluorescenceMammalsMiceOpossumsPan troglodytesPhylogenyRatsSequence AlignmentEukaryotic Initiation Factor-1eukaryotic peptide initiation factor-1AUbiquitin-Activating Enzymes

Identifiers

PMID26017895
PMCPMC4446799

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.