Evidence map›Paper›PMID 26016672›Full record

ArticleBMC genomics2015

Polyketide synthesis genes associated with toxin production in two species of Gambierdiscus (Dinophyceae).

Gurjeet S Kohli, Uwe John, Rosa I Figueroa, Lesley L Rhodes, D Tim Harwood, Marco Groth, Christopher J S Bolch, Shauna A Murray

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  7. Article
  8. Article
  9. Article
  10. Toxins · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Biosynthesis of Polyketides inMicroorganisms · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 4 countries.

Gurjeet S KohliPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, Broadway, New South Wales, 2007, Australia. Gurjeet.kohli@uts.edu.au.
Uwe JohnAlfred Wegener Institute for Polar and Marine Research, Bremerhaven, 27515, Germany. uwe.john@awi.de.
Rosa I FigueroaAquatic Ecology, Department of Biology, Lund University, Lund, 223 62, Sweden. rosa.figueroa@biol.lu.se.
Lesley L RhodesCawthron Institute, Nelson, 7010, New Zealand. Lesley.rhodes@cawthron.org.nz.
D Tim HarwoodCawthron Institute, Nelson, 7010, New Zealand. tim.harwood@cawthron.org.nz.
Marco GrothLeibniz Institute for Age Research, Fritz Lipmann Institute, Jena, D-07745, Germany. mgroth@fli-leibniz.de.
Christopher J S BolchInstitute for Marine and Antarctic Studies, University of Tasmania, Launceston, 7248, Tasmania, Australia. chris.bolch@utas.edu.au.
Shauna A MurrayPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, Broadway, New South Wales, 2007, Australia. shauna.murray@uts.edu.au.
Cawthron Institute · NZUniversity of Technology Sydney · AUAlfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung · DELeibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DELund University · SEUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMarine microbial protists, in particular, dinoflagellates, produce polyketide toxins with ecosystem-wide and human health impacts. Species of Gambierdiscus produce the polyether ladder compounds ciguatoxins and maitotoxins, which can lead to ciguatera fish poisoning, a serious human illness associated with reef fish consumption. Genes associated with the biosynthesis of polyether ladder compounds are yet to be elucidated, however, stable isotope feeding studies of such compounds consistently support their polyketide origin indicating that polyketide synthases are involved in their biosynthesis.

resultsHere, we report the toxicity, genome size, gene content and transcriptome of Gambierdiscus australes and G. belizeanus. G. australes produced maitotoxin-1 and maitotoxin-3, while G. belizeanus produced maitotoxin-3, for which cell extracts were toxic to mice by IP injection (LD50 = 3.8 mg kg(-1)). The gene catalogues comprised 83,353 and 84,870 unique contigs, with genome sizes of 32.5 ± 3.7 Gbp and 35 ± 0.88 Gbp, respectively, and are amongst the most comprehensive yet reported from a dinoflagellate. We found three hundred and six genes involved in polyketide biosynthesis, including one hundred and ninety-two ketoacyl synthase transcripts, which formed five unique phylogenetic clusters.

conclusionsTwo clusters were unique to these maitotoxin-producing dinoflagellate species, suggesting that they may be associated with maitotoxin biosynthesis. This work represents a significant step forward in our understanding of the genetic basis of polyketide production in dinoflagellates, in particular, species responsible for ciguatera fish poisoning.

Indexed as

AnimalsDinoflagellidaGene Expression ProfilingGenome, ProtozoanGenome SizeMarine ToxinsMiceMultigene FamilyOxocinsPhylogenyPolyether ToxinsPolyketide SynthasesProtozoan ProteinsmaitotoxinMarine ToxinsOxocinsPolyether ToxinsPolyketide SynthasesProtozoan Proteins

Identifiers

PMID26016672
PMCPMC4445524
OpenAlexW1911672385

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.