Evidence map›Paper›PMID 26015597›Full record

ArticleRNA (New York, N.Y.)2015

Xenopus CAF1 requires NOT1-mediated interaction with 4E-T to repress translation in vivo.

Shruti Waghray, Clay Williams, Joshua J Coon, Marvin Wickens

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Mechanistic Insights into MicroRNA-Mediated Gene Silencing.Cold Spring Harbor perspectives in biology · 2019
    Review
  15. Article
  16. Review
  17. Article
  18. Translational repression of theRNA (New York, N.Y.) · 2017
    Article
  19. Article
  20. Cap-binding protein 4EHP effects translation silencing by microRNAs.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Shruti WaghrayDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Clay WilliamsDepartment of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Joshua J CoonDepartment of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Marvin WickensDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA wickens@biochem.wisc.edu.
University of Wisconsin–Madison · USUniversity of Wisconsin System · US

Funding

FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Cleavage, polyadenylation, and transport of mRNAR37GM031892 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 2003 to 2012
$3.5M
Sequential Ion/Ion Reactions for Large Peptide and Whole Protein CharacterizationR01GM080148 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2007 to 2015
$3.0M
CLEAVAGE, POLYADENYLATION, AND TRANSPORT OF MRNAR01GM031892 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI WICKENS, MARVIN P. · 1985 to 2000
$278k
NIGMS NIH HHS GM31892NIGMS NIH HHS GM50942NIGMS NIH HHS GM80148NIGMS NIH HHS R01 GM031892NIGMS NIH HHS R01 GM050942NIGMS NIH HHS R01 GM080148NIGMS NIH HHS R37 GM031892
6 · The paper itself

Abstract

RNA-regulatory factors bound to 3' UTRs control translation and stability. Repression often is associated with poly(A) removal. The deadenylase CAF1 is a core component of the CCR4-NOT complex. Our prior studies established that CAF1 represses translation independent of deadenylation. We sought the mechanism of its deadenylation-independent repression in Xenopus oocytes. Our data reveal a chain of interacting proteins that links CAF1 to CCR4-NOT and to Xp54 and 4E-T. Association of CAF1 with NOT1, the major subunit of CCR4-NOT, is required for repression by CAF1 tethered to a reporter mRNA. Affinity purification-mass spectrometry and coimmunoprecipitation revealed that at least five members of the CCR4-NOT complex were recruited by CAF1. The recruitment of these proteins required NOT1, as did the ability of tethered CAF1 to repress translation. In turn, NOT1 was needed to recruit Xp54 and 4E-T. We examined the role of 4E-T in repression using mutations that disrupted either eIF4E-dependent or -independent mechanisms. Expression of a 4E-T truncation that still bound eIF4E alleviated repression by tethered CAF1, NOT1, and Xp54. In contrast, a mutant 4E-T that failed to bind eIF4E did not. Repression of global translation was affected only by the eIF4E-dependent mechanism. Reporters bearing IRES elements revealed that repression via tethered CAF1 and Xp54 is cap- and eIF4E-independent, but requires one or more of eIF4A, eIF4B, and eIF4G. We propose that RNA-binding proteins, and perhaps miRNAs, repress translation through an analogous chain of interactions that begin with the 3' UTR-bound repressor and end with the noncanonical activity of 4E-T.

Indexed as

AnimalsHumansImmunoprecipitationMass SpectrometryNucleocytoplasmic Transport ProteinsProtein BiosynthesisTranscription FactorsXenopusCNOT1 protein, humanCNOT8 protein, humanEIF4ENIF1 protein, humanNucleocytoplasmic Transport ProteinsTranscription Factors4E-TCAF1CCR4–NOTNOT1translationXp54

Identifiers

PMID26015597
PMCPMC4478352
OpenAlexW2168380638

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.