Evidence map›Paper›PMID 26015579›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics.

Shana Elbaum-Garfinkle, Younghoon Kim, Krzysztof Szczepaniak, Carlos Chih-Hsiung Chen, Christian R Eckmann, Sua Myong, Clifford P Brangwynne

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 747 papers.

0numbers the graph read from it
0cells of the map it votes in
747citing papers in PubMed
34.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

747 citing papers in PubMed, 1,330 citations in OpenAlex.

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687 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Shana Elbaum-GarfinkleDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08540;
Younghoon KimDepartment of Bioengineering, University of Illinois at Urbana Champaign, Urbana, IL 61801;
Krzysztof SzczepaniakMax Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany; Department of Genetics, Martin-Luther-University, Halle-Wittenberg, 06108 Halle, Germany; Dresden International PhD Program, 01307 Dresden, Germany.
Carlos Chih-Hsiung ChenDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08540;
Christian R EckmannMax Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany; Department of Genetics, Martin-Luther-University, Halle-Wittenberg, 06108 Halle, Germany;
Sua MyongDepartment of Bioengineering, University of Illinois at Urbana Champaign, Urbana, IL 61801;
Clifford P BrangwynneDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08540; cbrangwy@princeton.edu.
Princeton University · USUniversity of Illinois Urbana-Champaign · USMartin Luther University Halle-Wittenberg · DEMax Planck Institute of Molecular Cell Biology and Genetics · DE

Funding

Cell growth control by cell and organelle size-dependent ribosome biogenesisDP2GM105437 · NIGMS · PRINCETON UNIVERSITY · PI BRANGWYNNE, CLIFFORD P · 2012 to 2012
$2.4M
Quantitative Stepwise Analysis of RNA InterferenceDP2GM105453 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MYONG, SUA · 2012 to 2012
$2.4M
NCCDPHP CDC HHS 1DP2GM105437-01NCCDPHP CDC HHS 1DP2 GM105453NIGMS NIH HHS DP2 GM105437NIGMS NIH HHS DP2 GM105453
6 · The paper itself

Abstract

P granules and other RNA/protein bodies are membrane-less organelles that may assemble by intracellular phase separation, similar to the condensation of water vapor into droplets. However, the molecular driving forces and the nature of the condensed phases remain poorly understood. Here, we show that the Caenorhabditis elegans protein LAF-1, a DDX3 RNA helicase found in P granules, phase separates into P granule-like droplets in vitro. We adapt a microrheology technique to precisely measure the viscoelasticity of micrometer-sized LAF-1 droplets, revealing purely viscous properties highly tunable by salt and RNA concentration. RNA decreases viscosity and increases molecular dynamics within the droplet. Single molecule FRET assays suggest that this RNA fluidization results from highly dynamic RNA-protein interactions that emerge close to the droplet phase boundary. We demonstrate than an N-terminal, arginine/glycine rich, intrinsically disordered protein (IDP) domain of LAF-1 is necessary and sufficient for both phase separation and RNA-protein interactions. In vivo, RNAi knockdown of LAF-1 results in the dissolution of P granules in the early embryo, with an apparent submicromolar phase boundary comparable to that measured in vitro. Together, these findings demonstrate that LAF-1 is important for promoting P granule assembly and provide insight into the mechanism by which IDP-driven molecular interactions give rise to liquid phase organelles with tunable properties.

Indexed as

ViscosityAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsRNA HelicasesRNA, HelminthCaenorhabditis elegans ProteinsRNA HelicasesRNA, Helminthintracellular phase transitionintrinsically disordered proteinsliquid dropletsRNA granules

Identifiers

PMID26015579
PMCPMC4466716
OpenAlexW2111796925

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.