Evidence map›Paper›PMID 26015512›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2015

Pharmacoethnicity in Paclitaxel-Induced Sensory Peripheral Neuropathy.

Masaaki Komatsu, Heather E Wheeler, Suyoun Chung, Siew-Kee Low, Claudia Wing, Shannon M Delaney, Lidija K Gorsic, Atsushi Takahashi, Michiaki Kubo, Deanna L Kroetz and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 3 pooled it
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 3 syntheses or guidelines pooled it, 53 citations in OpenAlex.

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  11. Pharmacogenomic and Statistical Analysis.Methods in molecular biology (Clifton, N.J.) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Masaaki KomatsuSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois.
Heather E WheelerSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois.
Suyoun ChungSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois. Division of Cancer Development System, National Cancer Center Research Institute, Tokyo, Japan.
Siew-Kee LowLaboratory for Statistical Analysis, Core for Genomic Medicine, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan. Laboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Claudia WingSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois.
Shannon M DelaneySection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois.
Lidija K GorsicSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois.
Atsushi TakahashiLaboratory for Statistical Analysis, Core for Genomic Medicine, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Michiaki KuboLaboratory for Genotyping Development, Core for Genomic Medicine, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Deanna L KroetzDepartment of Bioengineering and Therapeutic Sciences, School of Pharmacy and Medicine, University of California, San Francisco, San Francisco, California.
Wei ZhangDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Yusuke NakamuraSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois. Laboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
M Eileen DolanSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois. edolan@medicine.bsd.uchicago.edu.
The University of Tokyo · JP

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Whole GenomeU01GM061393 · NIGMS · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN · 2000 to 2014
$39.0M
PHARMACOGENETICS OF MEMBRANE TRANSPORTERSU01GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GIACOMINI, KATHLEEN M · 2000 to 2009
$29.2M
Variation in Hormone and xenobiotic metabolizing enzyme genes and breast cancerP50CA125183 · NCI · UNIVERSITY OF CHICAGO · PI COX, NANCY · 2006 to 2010
$11.3M
Genetic determinants associated with pemetrexed response and toxicityR01CA136765 · NCI · UNIVERSITY OF CHICAGO · PI DOLAN, MARY EILEEN · 2009 to 2013
$1.6M
Pharmacogenomics of the chemotherapeutic agent paclitaxelF32CA165823 · NCI · UNIVERSITY OF CHICAGO · PI WHEELER, HEATHER ELIZABETH · 2012 to 2013
$106k
NCI NIH HHS F32 CA165823NCI NIH HHS F32CA165823NCI NIH HHS P30 CA060553NCI NIH HHS P50 CA125183NCI NIH HHS R01 CA136765NIGMS NIH HHS U01 GM061390NIGMS NIH HHS U01 GM061393NIGMS NIH HHS U01GM61390NIGMS NIH HHS U01GM61393
6 · The paper itself

Abstract

purposePaclitaxel is used worldwide in the treatment of breast, lung, ovarian, and other cancers. Sensory peripheral neuropathy is an associated adverse effect that cannot be predicted, prevented, or mitigated. To better understand the contribution of germline genetic variation to paclitaxel-induced peripheral neuropathy, we undertook an integrative approach that combines genome-wide association study (GWAS) data generated from HapMap lymphoblastoid cell lines (LCL) and Asian patients.

methodsGWAS was performed with paclitaxel-induced cytotoxicity generated in 363 LCLs and with paclitaxel-induced neuropathy from 145 Asian patients. A gene-based approach was used to identify overlapping genes and compare with a European clinical cohort of paclitaxel-induced neuropathy. Neurons derived from human-induced pluripotent stem cells were used for functional validation of candidate genes.

resultsSNPs near AIPL1 were significantly associated with paclitaxel-induced cytotoxicity in Asian LCLs (P < 10(-6)). Decreased expression of AIPL1 resulted in decreased sensitivity of neurons to paclitaxel by inducing neurite morphologic changes as measured by increased relative total outgrowth, number of processes and mean process length. Using a gene-based analysis, there were 32 genes that overlapped between Asian LCL cytotoxicity and Asian patient neuropathy (P < 0.05), including BCR. Upon BCR knockdown, there was an increase in neuronal sensitivity to paclitaxel as measured by neurite morphologic characteristics.

conclusionsWe identified genetic variants associated with Asian paclitaxel-induced cytotoxicity and functionally validated the AIPL1 and BCR in a neuronal cell model. Furthermore, the integrative pharmacogenomics approach of LCL/patient GWAS may help prioritize target genes associated with chemotherapeutic-induced peripheral neuropathy.

Indexed as

PharmacogeneticsAdaptor Proteins, Signal TransducingAntineoplastic Agents, PhytogenicCarrier ProteinsCell Line, TumorCell SurvivalDEAD-box RNA HelicasesEye ProteinsGenome-Wide Association StudyHumansInduced Pluripotent Stem CellsNeoplasm ProteinsNeuronsPaclitaxelPeripheral Nervous System DiseasesPolymorphism, Single NucleotideAdaptor Proteins, Signal TransducingAIPL1 protein, humanAntineoplastic Agents, PhytogenicCarrier ProteinsDDX54 protein, humanDEAD-box RNA HelicasesEye ProteinsNeoplasm ProteinsPaclitaxelProto-Oncogene Proteins c-bcr

Identifiers

PMID26015512
PMCPMC4592389
OpenAlexW2158629339

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.