Evidence map›Paper›PMID 26015480›Full record

ArticleInfection and immunity2015

Transcriptome reprogramming by plasmid-encoded transcriptional regulators is required for host niche adaption of a macrophage pathogen.

Garry B Coulson, Aleksandra A Miranda-CasoLuengo, Raúl Miranda-CasoLuengo, Xiaoguang Wang, Jenna Oliver, Jennifer M Willingham-Lane, Wim G Meijer, Mary K Hondalus

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Phenotypical and molecular characterization of Rhodococcus equi isolated from foals in the Agreste region of Pernambuco - Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  4. Review
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  9. Article
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  12. Why do plasmids manipulate the expression of bacterial phenotypes?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  13. Current Trends in Understanding and Managing Equine Rhodococcosis.Animals : an open access journal from MDPI · 2020
    Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Garry B CoulsonDepartment of Infectious Diseases, University of Georgia, Athens, Georgia, USA.
Aleksandra A Miranda-CasoLuengoUCD School of Biomolecular and Biomedical Science and UCD Conway Institute, University College Dublin, Dublin, Ireland.
Raúl Miranda-CasoLuengoUCD School of Biomolecular and Biomedical Science and UCD Conway Institute, University College Dublin, Dublin, Ireland.
Xiaoguang WangUCD School of Biomolecular and Biomedical Science and UCD Conway Institute, University College Dublin, Dublin, Ireland.
Jenna OliverDepartment of Infectious Diseases, University of Georgia, Athens, Georgia, USA.
Jennifer M Willingham-LaneDepartment of Infectious Diseases, University of Georgia, Athens, Georgia, USA.
Wim G MeijerUCD School of Biomolecular and Biomedical Science and UCD Conway Institute, University College Dublin, Dublin, Ireland wim.meijer@ucd.ie hondalus@uga.edu.
Mary K HondalusDepartment of Infectious Diseases, University of Georgia, Athens, Georgia, USA wim.meijer@ucd.ie hondalus@uga.edu.
University College Dublin · IEUniversity of Georgia · US

Funding

Virulence of the opportunistic pathogen Rhodococcus equiR01AI060469 · NIAID · UNIVERSITY OF GEORGIA · PI HONDALUS, MARY · 2006 to 2010
$1.6M
NIAID NIH HHS R01 AI060469
6 · The paper itself

Abstract

Rhodococcus equi is a facultative intracellular pathogen of macrophages, relying on the presence of a conjugative virulence plasmid harboring a 21-kb pathogenicity island (PAI) for growth in host macrophages. The PAI encodes a family of 6 virulence-associated proteins (Vaps) in addition to 20 other proteins. The contribution of these to virulence has remained unclear. We show that the presence of only 3 virulence plasmid genes (of 73 in total) is required and sufficient for intracellular growth. These include a single vap family member, vapA, and two PAI-located transcriptional regulators, virR and virS. Both transcriptional regulators are essential for wild-type-level expression of vapA, yet vapA expression alone is not sufficient to allow intracellular growth. A whole-genome microarray analysis revealed that VirR and VirS substantially integrate themselves into the chromosomal regulatory network, significantly altering the transcription of 18% of all chromosomal genes. This pathoadaptation involved significant enrichment of select gene ontologies, in particular, enrichment of genes involved in transport processes, energy production, and cellular metabolism, suggesting a major change in cell physiology allowing the bacterium to grow in the hostile environment of the host cell. The results suggest that following the acquisition of the virulence plasmid by an avirulent ancestor of R. equi, coevolution between the plasmid and the chromosome took place, allowing VirR and VirS to regulate the transcription of chromosomal genes in a process that ultimately promoted intracellular growth. Our findings suggest a mechanism for cooption of existing chromosomal traits during the evolution of a pathogenic bacterium from an avirulent saprophyte.

Indexed as

Gene Expression Regulation, BacterialTranscriptomeActinomycetales InfectionsAdaptation, PhysiologicalAnimalsBacterial ProteinsHumansMacrophagesMicePlasmidsRhodococcus equiTranscription, GeneticVirulence FactorsBacterial ProteinsVirulence Factors

Identifiers

PMID26015480
PMCPMC4496601
OpenAlexW1868335667

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.