Evidence map›Paper›PMID 26015295›Full record

ArticlePlant biotechnology journal2016

Systems biology and metabolic modelling unveils limitations to polyhydroxybutyrate accumulation in sugarcane leaves; lessons for C4 engineering.

Richard B McQualter, Chandra Bellasio, Leigh K Gebbie, Lars A Petrasovits, Robin W Palfreyman, Mark P Hodson, Manuel R Plan, Deborah M Blackman, Stevens M Brumbley, Lars K Nielsen

Open access · greenAbstract read
In one paragraph

Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Reduction of bundle sheath size boosts cyclic electron flow in CThe Plant journal : for cell and molecular biology · 2022
    Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. A generalised dynamic model of leaf-level CPhotosynthesis research · 2019
    Article
  7. Plant synthetic biology could drive a revolution in biofuels and medicine.Experimental biology and medicine (Maywood, N.J.) · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Richard B McQualterAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.ORCID http://orcid.org/0000-0002-1341-7871
Chandra BellasioDepartment of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield, UK.
Leigh K GebbieAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Lars A PetrasovitsAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Robin W PalfreymanAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Mark P HodsonMetabolomics Australia Queensland Node, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Manuel R PlanMetabolomics Australia Queensland Node, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Deborah M BlackmanAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Stevens M BrumbleyAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
Lars K NielsenAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, Australia.
The University of Queensland · AUUniversity of Sheffield · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In planta production of the bioplastic polyhydroxybutyrate (PHB) is one important way in which plant biotechnology can address environmental problems and emerging issues related to peak oil. However, high biomass C4 plants such as maize, switch grass and sugarcane develop adverse phenotypes including stunting, chlorosis and reduced biomass as PHB levels in leaves increase. In this study, we explore limitations to PHB accumulation in sugarcane chloroplasts using a systems biology approach, coupled with a metabolic model of C4 photosynthesis. Decreased assimilation was evident in high PHB-producing sugarcane plants, which also showed a dramatic decrease in sucrose and starch content of leaves. A subtle decrease in the C/N ratio was found which was not associated with a decrease in total protein content. An increase in amino acids used for nitrogen recapture was also observed. Based on the accumulation of substrates of ATP-dependent reactions, we hypothesized ATP starvation in bundle sheath chloroplasts. This was supported by mRNA differential expression patterns. The disruption in ATP supply in bundle sheath cells appears to be linked to the physical presence of the PHB polymer which may disrupt photosynthesis by scattering photosynthetically active radiation and/or physically disrupting thylakoid membranes.

Indexed as

Models, BiologicalCarbonChloroplastsCircadian RhythmGene Expression Regulation, PlantHydroxybutyratesMetabolic EngineeringMetabolomeNitrogenPhotosynthesisPlant LeavesPlants, Genetically ModifiedRNA, MessengerSaccharumSystems BiologyCarbonHydroxybutyratesNitrogenRNA, MessengerbiopolymerC4 metabolic modeldiurnalmRNAphotosynthesispolyhydroxybutyrate

Identifiers

PMID26015295
PMCPMC11629826
OpenAlexW2128915338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.