Evidence map›Paper›PMID 26013257›Full record

ArticleVirus genes2015

A new gyrovirus in human feces.

Tung Gia Phan, Antonio Charlys da Costa, Wen Zhang, Pierre Pothier, Katia Ambert-Balay, Xutao Deng, Eric Delwart

Abstract read
In one paragraph

Article in Virus genes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Gyrovirus: current status and challenge.Frontiers in microbiology · 2024
    Review
  4. Article
  5. Detection ofViruses · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
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  14. The Perioperative Lung Transplant Virome: Torque Teno Viruses Are Elevated in Donor Lungs and Show Divergent Dynamics in Primary Graft Dysfunction.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Tung Gia PhanBlood Systems Research Institute, San Francisco, CA, 94118, USA.
Antonio Charlys da Costa
Wen Zhang
Pierre Pothier
Katia Ambert-Balay
Xutao Deng
Eric Delwart
Blood Systems Research Institute · USMaison des Sciences de l’Homme de Dijon · FRUniversity of California, San Francisco · US

Funding

Metagenomic detection of emerging viruses in the blood supplyR01HL105770 · NHLBI · VITALANT · PI DELWART, ERIC L · 2011 to 2015
$2.4M
NHLBI NIH HHS R01 HL105770
6 · The paper itself

Abstract

A novel gyrovirus genome found in the feces of an adult with diarrhea is described. The genome shows the three expected main ORFs encoding a structural protein (VP1), nonstructural protein (VP2), and Apoptin protein (VP3), which shared identities of 41, 42, and 38 % with those of the most closely related gyrovirus proteins, respectively. Given the high divergence in its genome, this gyrovirus may be considered the prototype for a new viral species (GyV9) in the Gyrovirus genus. Because the closest relatives of this gyrovirus infect chicken, a possible dietary origin for the presence of this virus in human feces is discussed.

Indexed as

Genome, ViralAdultCircoviridae InfectionsCluster AnalysisDiarrheaDNA, ViralDNA VirusesFecesGyrovirusHumansMolecular Sequence DataOpen Reading FramesPhylogenySequence Analysis, DNASequence Homology, Amino AcidDNA, Viral

Identifiers

PMID26013257
PMCPMC4519424
OpenAlexW392545948

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.