Evidence map›Paper›PMID 26010545›Full record

ArticlePloS one2015

Structural Basis for the Inhibition of Helicobacter pylori α-Carbonic Anhydrase by Sulfonamides.

Joyanta K Modak, Joyanta K Modakh, Yu C Liu, Mayra A Machuca, Claudiu T Supuran, Anna Roujeinikova

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Article
  3. Challenges and Prospects for Eradication ofPathogens (Basel, Switzerland) · 2025
    Review
  4. Sulfonamide-Based Inhibition of the β-Carbonic Anhydrase fromInternational journal of molecular sciences · 2024
    Article
  5. Article
  6. Repurposing FDA-approved sulphonamide carbonic anhydrase inhibitors for treatment ofJournal of enzyme inhibition and medicinal chemistry · 2022
    Article
  7. Inhibition of α-, β- and γ-carbonic anhydrases from the pathogenic bacteriumJournal of enzyme inhibition and medicinal chemistry · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Flavodoxins as Novel Therapeutic Targets againstInternational journal of molecular sciences · 2020
    Review
  12. Article
  13. Article
  14. Anti-Journal of enzyme inhibition and medicinal chemistry · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Joyanta K Modak
Joyanta K ModakhDepartment of Microbiology, Faculty of Biomedical and Psychological Sciences, Monash University, Clayton, Victoria, Australia.
Yu C LiuDepartment of Microbiology, Faculty of Biomedical and Psychological Sciences, Monash University, Clayton, Victoria, Australia.
Mayra A MachucaDepartment of Microbiology, Faculty of Biomedical and Psychological Sciences, Monash University, Clayton, Victoria, Australia.
Claudiu T SupuranLaboratorio di Chimica Bioinorganica, Polo Scientifico, Università degli Studi di Firenze, Via della Lastruccia 3, Sesto Fiorentino (Florence) Italy; Neurofarba Department, Sezione di Scienze Farmaceutiche, Università degli Studi di Firenze, Via U. Schiff 6, Sesto Fiorentino (Firenze), Italy.
Anna RoujeinikovaDepartment of Microbiology, Faculty of Biomedical and Psychological Sciences, Monash University, Clayton, Victoria, Australia; Department of Biochemistry and Molecular Biology, Faculty of Biomedical and Psychological Sciences, Monash University, Clayton, Victoria, Australia.
Monash University · AUUniversity of Florence · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periplasmic α-carbonic anhydrase of Helicobacter pylori (HpαCA), an oncogenic bacterium in the human stomach, is essential for its acclimation to low pH. It catalyses the conversion of carbon dioxide to bicarbonate using Zn(II) as the cofactor. In H. pylori, Neisseria spp., Brucella suis and Streptococcus pneumoniae this enzyme is the target for sulfonamide antibacterial agents. We present structural analysis correlated with inhibition data, on the complexes of HpαCA with two pharmacological inhibitors of human carbonic anhydrases, acetazolamide and methazolamide. This analysis reveals that two sulfonamide oxygen atoms of the inhibitors are positioned proximal to the putative location of the oxygens of the CO2 substrate in the Michaelis complex, whilst the zinc-coordinating sulfonamide nitrogen occupies the position of the catalytic water molecule. The structures are consistent with acetazolamide acting as site-directed, nanomolar inhibitors of the enzyme by mimicking its reaction transition state. Additionally, inhibitor binding provides insights into the channel for substrate entry and product exit. This analysis has implications for the structure-based design of inhibitors of bacterial carbonic anhydrases.

Indexed as

AcetazolamideAmino Acid SequenceAnti-Bacterial AgentsCarbonic Anhydrase InhibitorsCarbonic AnhydrasesHelicobacter InfectionsHelicobacter pyloriHumansMethazolamideMolecular Sequence DataPeriplasmSequence AlignmentSulfonamidesAcetazolamideAnti-Bacterial AgentsCarbonic Anhydrase InhibitorsCarbonic AnhydrasesMethazolamideSulfonamides

Identifiers

PMID26010545
PMCPMC4444264
OpenAlexW2158394863

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.