Evidence map›Paper›PMID 26010488›Full record

ArticleInorganic chemistry2015

Characterization of the Copper(II) Binding Sites in Human Carbonic Anhydrase II.

Whitnee L Nettles, He Song, Erik R Farquhar, Nicholas C Fitzkee, Joseph P Emerson

Abstract read
In one paragraph

Article in Inorganic chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Energetics and dynamics of the proton shuttle of carbonic anhydrase II.Cellular and molecular life sciences : CMLS · 2023
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Carbonic anhydrase modification for carbon management.Environmental science and pollution research international · 2020
    Article
  9. Pull-Down of Metalloproteins in Their Native States by Using Desthiobiotin-Based Probes.Chembiochem : a European journal of chemical biology · 2019
    Article
  10. Dioxygen, an unexpected carbonic anhydrase ligand.Journal of enzyme inhibition and medicinal chemistry · 2018
    Article
  11. Frontiers in microbiology · 2018
    Article
  12. Long-range paramagnetic NMR data can provide a closer look on metal coordination in metalloproteins.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
  13. Article
  14. Coordination contributions to protein stability in metal-substituted carbonic anhydrase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Whitnee L Nettles†Department of Chemistry, Mississippi State University, Box 9573, Mississippi State, Mississippi 39762-9573, United States.
He Song†Department of Chemistry, Mississippi State University, Box 9573, Mississippi State, Mississippi 39762-9573, United States.
Erik R Farquhar‡National Synchrotron Light Source, Brookhaven National Laboratory, Case Western Reserve University Center for Synchrotron Biosciences, Upton, New York 11973, United States.
Nicholas C Fitzkee†Department of Chemistry, Mississippi State University, Box 9573, Mississippi State, Mississippi 39762-9573, United States.
Joseph P Emerson†Department of Chemistry, Mississippi State University, Box 9573, Mississippi State, Mississippi 39762-9573, United States.
Mississippi State University · USBrookhaven National Laboratory · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Functionalized Gold Nanoparticles: Understanding the Mechanism of Protein BindingR15GM113152 · NIGMS · MISSISSIPPI STATE UNIVERSITY · PI FITZKEE, NICHOLAS C · 2015 to 2015
$339k
NIBIB NIH HHS P30 EB009998NIBIB NIH HHS P30-EB-009998NIGMS NIH HHS R15 GM113152
6 · The paper itself

Abstract

Human carbonic anhydrase (CA) is a well-studied, robust, mononuclear Zn-containing metalloprotein that serves as an excellent biological ligand system to study the thermodynamics associated with metal ion coordination chemistry in aqueous solution. The apo form of human carbonic anhydrase II (CA) binds 2 equiv of copper(II) with high affinity. The Cu(2+) ions bind independently forming two noncoupled type II copper centers in CA (CuA and CuB). However, the location and coordination mode of the CuA site in solution is unclear, compared to the CuB site that has been well-characterized. Using paramagnetic NMR techniques and X-ray absorption spectroscopy we identified an N-terminal Cu(2+) binding location and collected information on the coordination mode of the CuA site in CA, which is consistent with a four- to five-coordinate N-terminal Cu(2+) binding site reminiscent to a number of N-terminal copper(II) binding sites including the copper(II)-amino terminal Cu(2+) and Ni(2+) and copper(II)-β-amyloid complexes. Additionally, we report a more detailed analysis of the thermodynamics associated with copper(II) binding to CA. Although we are still unable to fully deconvolute Cu(2+) binding data to the high-affinity CuA site, we derived pH- and buffer-independent values for the thermodynamics parameters K and ΔH associated with Cu(2+) binding to the CuB site of CA to be 2 × 10(9) and -17.4 kcal/mol, respectively.

Indexed as

Binding SitesCalorimetryCarbonic Anhydrase IICopperHumansMagnetic Resonance SpectroscopyModels, MolecularProtein ConformationSpectrophotometry, UltravioletThermodynamicsX-Ray Absorption SpectroscopyCarbonic Anhydrase IICopper

Identifiers

PMID26010488
PMCPMC4482258
OpenAlexW418990666

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.