Evidence map›Paper›PMID 26009014›Full record

ArticleImmunogenetics2015

Novel MHC class I full-length allele and haplotype characterization in sooty mangabeys.

Katelyn E Heimbruch, Julie A Karl, Roger W Wiseman, Dawn M Dudley, Zach Johnson, Amitinder Kaur, David H O'Connor

Abstract read
In one paragraph

Article in Immunogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Katelyn E HeimbruchWisconsin National Primate Research Center, University of Wisconsin-Madison, Madison, WI, 53715, USA.
Julie A Karl
Roger W Wiseman
Dawn M Dudley
Zach Johnson
Amitinder Kaur
David H O'Connor
University of Wisconsin–Madison · USEmory University · USTulane University · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
ZOLEDRONATE PREVENTS BONE LOSS IN OVARIECTOMIZED RHESUS MONKEYSP51RR000167 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI WATKINS, DAVID I · 1985 to 2011
$106.7M
EXTRAMURAL RES FACIL CONST: REPRODUCTIVE, GROWTH &DVMT, MENOPAUSEC06RR020141 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI CADWALLADER, MARTIN · 2004 to 2004
$3.6M
Immunogenetics of Primates Used for Bioterror ResearchR24RR021745 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI O'CONNOR, DAVID H. · 2005 to 2011
$3.3M
GENETICS LABORATORY RENOVATION PROJECTC06RR015450 · NCRR · DARTMOUTH COLLEGE · PI SPIELBERG, STEPHEN P · 2000 to 2000
$1.0M
NCRR NIH HHS C06 RR015450NCRR NIH HHS C06 RR020141NCRR NIH HHS P51 RR000167NCRR NIH HHS R24 RR021745NCRR NIH HHS RR020141-01NCRR NIH HHS RR15450-01NIAID NIH HHS HHSN272201100013CNIAID NIH HHS HHSN272201100013INIH HHS P51 OD011104NIH HHS P51 OD011106NIH HHS P51 OD0111103NIH HHS P51 OD011132PHS HHS HHSN272201100013C
6 · The paper itself

Abstract

Sooty mangabeys (Cercocebus atys) are natural SIV hosts and the presumed source of HIV-2 and SIVmac, which makes them a valuable model for HIV/SIV research. However, like other African primates, little is known about their major histocompatibility complex (MHC) genetics. In this study, we used Roche/454 and Illumina MiSeq deep sequencing in order to determine the MHC class I transcripts in a cohort of 165 sooty mangabeys from the Yerkes National Primate Research Center (YNPRC). We have characterized 121 functionally full-length classical (Ceat-A and Ceat-B) and non-classical (Ceat-F and Ceat-I) alleles and have also identified 22 Ceat-A/Ceat-B haplotype chromosomal combinations. We correlated these Ceat-A/Ceat-B haplotype combinations to recently described microsatellite haplotypes from the YNPRC colony. These newly identified alleles and haplotypes establish a resource for studying cellular immunity in sooty mangabeys and provide a framework for rapidly cataloging MHC class I sequences in an understudied, yet important, nonhuman primate species.

Indexed as

AllelesAnimalsCercocebus atysHaplotypesHigh-Throughput Nucleotide SequencingHistocompatibility Antigens Class IPolymerase Chain ReactionHistocompatibility Antigens Class I

Identifiers

PMID26009014
PMCPMC4498956
OpenAlexW920764071

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.