Evidence map›Paper›PMID 26005869›Full record

ArticleNature genetics2015

A cascade of arabinosyltransferases controls shoot meristem size in tomato.

Cao Xu, Katie L Liberatore, Cora A MacAlister, Zejun Huang, Yi-Hsuan Chu, Ke Jiang, Christopher Brooks, Mari Ogawa-Ohnishi, Guangyan Xiong, Markus Pauly and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 221 papers.

0numbers the graph read from it
0cells of the map it votes in
221citing papers in PubMed
51.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

221 citing papers in PubMed, 493 citations in OpenAlex.

  1. Article
  2. Multi-variant GWAS and genomic prediction dissect the genetic architecture underlying tomato fruit weight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. WUSCHEL Transcription Factor: From Stem Cell Maintenance to Crop Improvement.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  13. Reproductive Diversity in Cultivated Tomato (Plants (Basel, Switzerland) · 2026
    Article
  14. Article
  15. Article
  16. Fruit weight regulation by a paralog of Cell Size Regulator (CSR) in tomato and other crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  17. Review
  18. Review
  19. Article
  20. TheForestry research · 2026
    Article

161 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Cao XuCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Katie L Liberatore1] Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA. [2] Watson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Cora A MacAlisterCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Zejun HuangDepartment of Horticulture and Crop Science, Ohio State University, Wooster, Ohio, USA.ORCID 0000000286033684
Yi-Hsuan ChuDepartment of Horticulture and Crop Science, Ohio State University, Wooster, Ohio, USA.
Ke JiangCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Christopher BrooksCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Mari Ogawa-OhnishiDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya, Japan.
Guangyan XiongEnergy Biosciences Institute, University of California, Berkeley, Berkeley, California, USA.
Markus Pauly1] Energy Biosciences Institute, University of California, Berkeley, Berkeley, California, USA. [2] Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.
Joyce Van EckBoyce Thompson Institute for Plant Science, Ithaca, New York, USA.
Yoshikatsu MatsubayashiDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya, Japan.
Esther van der KnaapDepartment of Horticulture and Crop Science, Ohio State University, Wooster, Ohio, USA.
Zachary B Lippman1] Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA. [2] Watson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
University of Louisville · USCold Spring Harbor Laboratory · USCollege of Wooster · USNagoya University · JPCornell University · USEnergy Biosciences Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shoot meristems of plants are composed of stem cells that are continuously replenished through a classical feedback circuit involving the homeobox WUSCHEL (WUS) gene and the CLAVATA (CLV) gene signaling pathway. In CLV signaling, the CLV1 receptor complex is bound by CLV3, a secreted peptide modified with sugars. However, the pathway responsible for modifying CLV3 and its relevance for CLV signaling are unknown. Here we show that tomato inflorescence branching mutants with extra flower and fruit organs due to enlarged meristems are defective in arabinosyltransferase genes. The most extreme mutant is disrupted in a hydroxyproline O-arabinosyltransferase and can be rescued with arabinosylated CLV3. Weaker mutants are defective in arabinosyltransferases that extend arabinose chains, indicating that CLV3 must be fully arabinosylated to maintain meristem size. Finally, we show that a mutation in CLV3 increased fruit size during domestication. Our findings uncover a new layer of complexity in the control of plant stem cell proliferation.

Indexed as

Base SequenceFlowersFruitGlycosylationMeristemMolecular Sequence DataMutationPentosyltransferasesPlant ProteinsProtein Processing, Post-TranslationalSolanum lycopersicumarabinosyltransferasePentosyltransferasesPlant Proteins

Identifiers

PMID26005869
OpenAlexW1635829456

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.