Evidence map›Paper›PMID 26004848›Full record

ArticleJournal of neuroscience methods2015

Total protein is an effective loading control for cerebrospinal fluid western blots.

Mahlon A Collins, Jiyan An, Danielle Peller, Robert Bowser

Open access · hybridAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 90 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Anhedonia and Increased Evoked Immune Response.Brain, behavior, & immunity - health · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Use of the REVERTMolecular and cellular endocrinology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Mahlon A CollinsDepartment of Neurobiology, University of Pittsburgh, 200 South Lothrop Street, Pittsburgh, PA 15213, USA; Departments of Neurobiology and Neurology, St. Joseph's Hospital and Medical Center and Barrow Neurological Institute, 350 West Thomas Road, Phoenix, AZ 85013, USA. Electronic address: mac230@pitt.edu.
Jiyan AnDepartments of Neurobiology and Neurology, St. Joseph's Hospital and Medical Center and Barrow Neurological Institute, 350 West Thomas Road, Phoenix, AZ 85013, USA. Electronic address: Jiyan.An@dignityhealth.org.
Danielle PellerDepartments of Neurobiology and Neurology, St. Joseph's Hospital and Medical Center and Barrow Neurological Institute, 350 West Thomas Road, Phoenix, AZ 85013, USA. Electronic address: Danielle.Peller@dignityhealth.org.
Robert BowserDepartments of Neurobiology and Neurology, St. Joseph's Hospital and Medical Center and Barrow Neurological Institute, 350 West Thomas Road, Phoenix, AZ 85013, USA. Electronic address: Robert.Bowser@dignityhealth.org.
St. Joseph's Hospital and Medical Center · USBarrow Neurological Institute · US

Funding

Peptide and Protein Biomarkers for Amyotrophic Lateral Sclerosis (ALS)R01NS061867 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BOWSER, ROBERT P · 2009 to 2013
$1.6M
Multi-Center Validation of Biomarkers for Motor Neuron DiseaseRC1NS068179 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BOWSER, ROBERT P, CUDKOWICZ, MERIT E · 2009 to 2010
$977k
Peptide and Protein Biomarkers for Amyotrophic Lateral Sclerosis (ALS)R56NS061867 · NINDS · ST. JOSEPH'S HOSPITAL AND MEDICAL CENTER · PI BOWSER, ROBERT P · 2014 to 2014
$687k
The Functional Role of RBM45 in Gene Expression and NeurodegenerationF31NS080614 · NINDS · ST. JOSEPH'S HOSPITAL AND MEDICAL CENTER · PI COLLINS, MAHLON · 2012 to 2014
$119k
NINDS NIH HHS F31 NS080614NINDS NIH HHS F31NS080614-01NINDS NIH HHS NS061867NINDS NIH HHS NS068179NINDS NIH HHS R01 NS061867NINDS NIH HHS R56 NS061867NINDS NIH HHS RC1 NS068179
6 · The paper itself

Abstract

backgroundCerebrospinal fluid (CSF) has been used to identify biomarkers of neurological disease. CSF protein biomarkers identified by high-throughput methods, however, require further validation. While Western blotting (WB) is well-suited to this task, the lack of a validated loading control for CSF WB limits the method's accuracy. NEW

methodWe investigated the use of total protein (TP) as a CSF WB loading control. Using iodine-based reversible membrane staining, we determined the linear range and consistency of the CSF TP signal. We then spiked green fluorescent protein (GFP) into CSF to create defined sample-to-sample differences in GFP levels that were measured by WB before and after TP loading correction. Levels of CSF complement C3 and cystatin C measured by WB with TP loading correction and ELISA in amyotrophic lateral sclerosis and healthy control CSF samples were then compared.

resultsCSF WB with the TP loading control accurately detected defined differences in GFP levels and corrected for simulated loading errors. Individual CSF sample Western blot and ELISA measurements of complement C3 and cystatin C were significantly correlated and the methods showed a comparable ability to detect between-groups differences. COMPARISON WITH EXISTING

methodCSF TP staining has a greater linear dynamic range and sample-to-sample consistency than albumin, a commonly used CSF loading control. The method accurately corrects for simulated errors in loading and improves the sensitivity of CSF WB compared to using no loading control.

conclusionsThe TP staining loading control improves the sensitivity and accuracy of CSF WB results.

Indexed as

Blotting, WesternAlbuminsCerebrospinal Fluid ProteinsColoring AgentsEnzyme-Linked Immunosorbent AssayFemaleGreen Fluorescent ProteinsHumansLinear ModelsMaleSpinal PunctureStaining and LabelingStudentsUniversitiesAlbuminsCerebrospinal Fluid ProteinsColoring AgentsGreen Fluorescent ProteinsCerebrospinal fluidLoading controlTotal protein stainWestern blot

Identifiers

PMID26004848
PMCPMC4540354
OpenAlexW277625174

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.