Evidence map›Paper›PMID 26004825›Full record

ArticleComputers in biology and medicine2015

Automated high-content morphological analysis of muscle fiber histology.

Mauro Miazaki, Matheus P Viana, Zhong Yang, Cesar H Comin, Yaming Wang, Luciano da F Costa, Xiaoyin Xu

Open access · greenAbstract read
In one paragraph

Article in Computers in biology and medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Mauro MiazakiInstitute of Physics at Sao Carlos, University of Sao Paulo, Sao Carlos, SP, Brazil; Department of Computer Science, Midwestern State University, Guarapuava, PR, Brazil.
Matheus P VianaInstitute of Physics at Sao Carlos, University of Sao Paulo, Sao Carlos, SP, Brazil.
Zhong YangDepartment of Anesthesia, Brigham and Women's Hospital, Boston, MA, USA; Department of Clinical Hematology, Southwestern Hospital, The Third Military Medical University, Chongqing, China.
Cesar H CominInstitute of Physics at Sao Carlos, University of Sao Paulo, Sao Carlos, SP, Brazil.
Yaming WangDepartment of Anesthesia, Brigham and Women's Hospital, Boston, MA, USA.
Luciano da F CostaInstitute of Physics at Sao Carlos, University of Sao Paulo, Sao Carlos, SP, Brazil; National Institute of Science and Technology for Complex Systems, Niteroi, RJ, Brazil.
Xiaoyin XuDepartment of Radiology, Brigham and Women's Hospital, 20 Shattuck Street, Boston, MA 02115, USA. Electronic address: xxu@bwh.harvard.edu.
Brigham and Women's Hospital · USUniversidade de São Paulo · BRUniversidade Federal de São Carlos · BRArmy Medical University · CN

Funding

A novel informatics approach to understanding complex muscle fiber phenotypesR01LM011415 · NLM · BRIGHAM AND WOMEN'S HOSPITAL · PI XU, XIAOYIN · 2014 to 2017
$1.5M
Strategies to improve stem cell engraftment into muscleK02AR051181 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI WANG, YAMING · 2004 to 2008
$535k
NIAMS NIH HHS K02 AR051181NIAMS NIH HHS K02AR051181NLM NIH HHS R01 LM011415NLM NIH HHS R01LM011415
6 · The paper itself

Abstract

In the search for a cure for many muscular disorders it is often necessary to analyze muscle fibers under a microscope. For this morphological analysis, we developed an image processing approach to automatically analyze and quantify muscle fiber images so as to replace today's less accurate and time-consuming manual method. Muscular disorders, that include cardiomyopathy, muscular dystrophies, and diseases of nerves that affect muscles such as neuropathy and myasthenia gravis, affect a large percentage of the population and, therefore, are an area of active research for new treatments. In research, the morphological features of muscle fibers play an important role as they are often used as biomarkers to evaluate the progress of underlying diseases and the effects of potential treatments. Such analysis involves assessing histopathological changes of muscle fibers as indicators for disease severity and also as a criterion in evaluating whether or not potential treatments work. However, quantifying morphological features is time-consuming, as it is usually performed manually, and error-prone. To replace this standard method, we developed an image processing approach to automatically detect and measure the cross-sections of muscle fibers observed under microscopy that produces faster and more objective results. As such, it is well-suited to processing the large number of muscle fiber images acquired in typical experiments, such as those from studies with pre-clinical models that often create many images. Tests on real images showed that the approach can segment and detect muscle fiber membranes and extract morphological features from highly complex images to generate quantitative results that are readily available for statistical analysis.

Indexed as

AnimalsImage Processing, Computer-AssistedMaleMiceMice, Inbred mdxMuscle Fibers, SkeletalMuscular DiseasesCross sectionsMorphology of muscle fibersMuscular dystrophyQuantificationSegmentation

Identifiers

PMID26004825
PMCPMC4492853
OpenAlexW2025710021

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.