Evidence map›Paper›PMID 26003183›Full record

ArticleMedical & biological engineering & computing2015

A new way to visualize DNA's base succession: the Caenorhabditis elegans chromosome landscapes.

Afef Elloumi Oueslati, Imen Messaoudi, Zied Lachiri, Noureddine Ellouze

Abstract read
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In one paragraph

Article in Medical & biological engineering & computing, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 11 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Afef Elloumi OueslatiLaboratoire Signal, Image et Technologies de l'information, Département de Génie Electrique, Ecole Nationale d'Ingénieurs de Tunis, BP 37, Campus Universitaire, Le Belvédère, 1002, Tunis Cedex, Tunisia. Afef.Elloumi@enit.rnu.tn.
Imen MessaoudiLaboratoire Signal, Image et Technologies de l'information, Département de Génie Electrique, Ecole Nationale d'Ingénieurs de Tunis, BP 37, Campus Universitaire, Le Belvédère, 1002, Tunis Cedex, Tunisia.
Zied LachiriDépartement de Génie Physique et Instrumentation, Institut National des Sciences Appliquées et de Technologie, BP 676, Centre Urbain, 1080, Tunis Cedex, Tunisia.
Noureddine EllouzeLaboratoire Signal, Image et Technologies de l'information, Département de Génie Electrique, Ecole Nationale d'Ingénieurs de Tunis, BP 37, Campus Universitaire, Le Belvédère, 1002, Tunis Cedex, Tunisia.
National Institute of Applied Science and Technology · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the eukaryotic genomes, the genetic diseases are generally associated with the tandem repeats. These repeats seem to appear frequently. In this paper, we are describing a wavelet transform technique which provides a new way to represent the DNA succession bases as a DNA progression images. These images offer DNA landscapes, visualizing and following up periodicities through genomes. We investigated in a structural coding technique the Pnuc. Then, we illustrated, with time-frequency representation, the existence and the superposition of the periodicities in some biological features, their locations and the different ways in which they appear. The representations generated showed that one periodicity can sometimes be alone, but generally, it is incorporated to others. These periodicities associations create, in the Caenorhabditis elegans chromosome, a precise structural image of biological features, such as CeRep, Helitrons, repeats and satellites.

Indexed as

DNA, HelminthWavelet AnalysisAnimalsCaenorhabditis elegansChromosomesRepetitive Sequences, Nucleic AcidSequence Analysis, DNADNA, HelminthBiological featuresCeRepHelitronsStructural-specific landscape imagesTime–frequency evolutionWavelet analysis

Identifiers

PMID26003183
OpenAlexW327619053

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.