Evidence map›Paper›PMID 26002901›Full record

ArticleApplied and environmental microbiology2015

Survival of Listeria monocytogenes in Soil Requires AgrA-Mediated Regulation.

Anne-Laure Vivant, Dominique Garmyn, Laurent Gal, Alain Hartmann, Pascal Piveteau

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Anne-Laure VivantUniversité de Bourgogne, UMR1347 Agroécologie, Dijon, France INRA, UMR1347 Agroécologie, Dijon, France.
Dominique GarmynUniversité de Bourgogne, UMR1347 Agroécologie, Dijon, France INRA, UMR1347 Agroécologie, Dijon, France.
Laurent GalINRA, UMR1347 Agroécologie, Dijon, France AgroSup Dijon, UMR1347 Agroécologie, Dijon, France.
Alain HartmannUniversité de Bourgogne, UMR1347 Agroécologie, Dijon, France INRA, UMR1347 Agroécologie, Dijon, France.
Pascal PiveteauUniversité de Bourgogne, UMR1347 Agroécologie, Dijon, France INRA, UMR1347 Agroécologie, Dijon, France piveteau@u-bourgogne.fr.
Agroécologie · FRInstitut Agro Dijon · FRUniversité de Bourgogne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In a recent paper, we demonstrated that inactivation of the Agr system affects the patterns of survival of Listeria monocytogenes (A.-L. Vivant, D. Garmyn, L. Gal, and P. Piveteau, Front Cell Infect Microbiol 4:160, http://dx.doi.org/10.3389/fcimb.2014.00160). In this study, we investigated whether the Agr-mediated response is triggered during adaptation in soil, and we compared survival patterns in a set of 10 soils. The fate of the parental strain L. monocytogenes L9 (a rifampin-resistant mutant of L. monocytogenes EGD-e) and that of a ΔagrA deletion mutant were compared in a collection of 10 soil microcosms. The ΔagrA mutant displayed significantly reduced survival in these biotic soil microcosms, and differential transcriptome analyses showed large alterations of the transcriptome when AgrA was not functional, while the variations in the transcriptomes between the wild type and the ΔagrA deletion mutant were modest under abiotic conditions. Indeed, in biotic soil environments, 578 protein-coding genes and an extensive repertoire of noncoding RNAs (ncRNAs) were differentially transcribed. The transcription of genes coding for proteins involved in cell envelope and cellular processes, including the phosphotransferase system and ABC transporters, and proteins involved in resistance to antimicrobial peptides was affected. Under sterilized soil conditions, the differences were limited to 86 genes and 29 ncRNAs. These results suggest that the response regulator AgrA of the Agr communication system plays important roles during the saprophytic life of L. monocytogenes in soil.

Indexed as

Gene Expression Regulation, BacterialMicrobial ViabilitySoil MicrobiologyBacterial ProteinsGene DeletionGene Expression ProfilingListeria monocytogenesRNA, UntranslatedTranscription FactorsTranscription, GeneticBacterial ProteinsRNA, UntranslatedTranscription Factors

Identifiers

PMID26002901
PMCPMC4495223
OpenAlexW2123140609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.