Evidence map›Paper›PMID 26002871›Full record

ArticleThe Plant cell2015

Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.

Kevin Vanneste, Lieven Sterck, Alexander Andrew Myburg, Yves Van de Peer, Eshchar Mizrachi

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
18.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 78 citations in OpenAlex.

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  6. An improved assembly of the "Cascade" hop (Horticulture research · 2023
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  11. Review
  12. Article
  13. Paleo-polyploidization in Lycophytes.Genomics, proteomics & bioinformatics · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Genome Sequencing ofG3 (Bethesda, Md.) · 2019
    Article
  18. Article
  19. Dating Whole Genome Duplication inInternational journal of molecular sciences · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Kevin VannesteDepartment of Plant Systems Biology, VIB, Ghent B-9052, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent B-9052, Belgium.
Lieven SterckDepartment of Plant Systems Biology, VIB, Ghent B-9052, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent B-9052, Belgium.ORCID http://orcid.org/0000-0001-7116-4000
Alexander Andrew MyburgDepartment of Genetics, Forestry, and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa Department of Genetics, Genomics Research Institute, University of Pretoria, Pretoria 0028, South Africa.
Yves Van de PeerDepartment of Plant Systems Biology, VIB, Ghent B-9052, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent B-9052, Belgium Department of Genetics, Genomics Research Institute, University of Pretoria, Pretoria 0028, South Africa yves.vandepeer@psb.ugent.be eshchar.mizrachi@fabi.up.ac.za.
Eshchar MizrachiDepartment of Genetics, Forestry, and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa Department of Genetics, Genomics Research Institute, University of Pretoria, Pretoria 0028, South Africa yves.vandepeer@psb.ugent.be eshchar.mizrachi@fabi.up.ac.za.
Ghent University · BEUniversity of Pretoria · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horsetails represent an enigmatic clade within the land plants. Despite consisting only of one genus (Equisetum) that contains 15 species, they are thought to represent the oldest extant genus within the vascular plants dating back possibly as far as the Triassic. Horsetails have retained several ancient features and are also characterized by a particularly high chromosome count (n = 108). Whole-genome duplications (WGDs) have been uncovered in many angiosperm clades and have been associated with the success of angiosperms, both in terms of species richness and biomass dominance, but remain understudied in nonangiosperm clades. Here, we report unambiguous evidence of an ancient WGD in the fern lineage, based on sequencing and de novo assembly of an expressed gene catalog (transcriptome) from the giant horsetail (Equisetum giganteum). We demonstrate that horsetails underwent an independent paleopolyploidy during the Late Cretaceous prior to the diversification of the genus but did not experience any recent polyploidizations that could account for their high chromosome number. We also discuss the specific retention of genes following the WGD and how this may be linked to their long-term survival.

Indexed as

PolyploidyBiological EvolutionChromosomes, PlantEquisetumFernsGene DuplicationGenome, PlantTranscriptome

Identifiers

PMID26002871
PMCPMC4498207
OpenAlexW1951168065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.