Evidence map›Paper›PMID 26002521›Full record

ArticleMolecular & cellular proteomics : MCP2015

Bisecting Galactose as a Feature of N-Glycans of Wild-type and Mutant Caenorhabditis elegans.

Shi Yan, Lothar Brecker, Chunsheng Jin, Alexander Titz, Martin Dragosits, Niclas G Karlsson, Verena Jantsch, Iain B H Wilson, Katharina Paschinger

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Chemical science · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Towards understanding the extensive diversity of protein N-glycan structures in eukaryotes.Biological reviews of the Cambridge Philosophical Society · 2022
    Review
  8. Review
  9. Review
  10. Article
  11. N-glycomic Complexity in Anatomical Simplicity:Frontiers in molecular biosciences · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The Journal of biological chemistry · 2017
    Article
  18. Article
  19. Analysis of Invertebrate and Protist N-Glycans.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  20. Beilstein journal of organic chemistry · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Shi YanFrom the ‡Department für Chemie, Universität für Bodenkultur, 1190 Wien, Austria;
Lothar Brecker§Institut für Organische Chemie, Universität Wien, 1090 Wien, Austria;
Chunsheng Jin¶Institutionen för Biomedicin, Göteborgs universitet, 405 30 Göteborg, Sweden;
Alexander TitzFrom the ‡Department für Chemie, Universität für Bodenkultur, 1190 Wien, Austria;
Martin DragositsFrom the ‡Department für Chemie, Universität für Bodenkultur, 1190 Wien, Austria;
Niclas G Karlsson¶Institutionen för Biomedicin, Göteborgs universitet, 405 30 Göteborg, Sweden;ORCID http://orcid.org/0000-0002-3045-2628
Verena Jantsch‖Department für Chromosomenbiologie, Max F. Perutz Laboratories, Universität Wien, 1030 Wien, Austria.ORCID http://orcid.org/0000-0002-1978-682X
Iain B H WilsonFrom the ‡Department für Chemie, Universität für Bodenkultur, 1190 Wien, Austria; iain.wilson@boku.ac.at.ORCID http://orcid.org/0000-0001-8996-1518
Katharina PaschingerFrom the ‡Department für Chemie, Universität für Bodenkultur, 1190 Wien, Austria;ORCID http://orcid.org/0000-0002-3594-7136
University of Vienna · ATGöteborgs Stads · SEBOKU University · AT

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Austrian Science Fund FWF P 21946Austrian Science Fund FWF P 23638Austrian Science Fund FWF P 23922NIH HHS P40 OD010440
6 · The paper itself

Abstract

The N-glycosylation of the model nematode Caenorhabditis elegans has proven to be highly variable and rather complex; it is an example to contradict the existing impression that "simple" organisms possess also a rather simple glycomic capacity. In previous studies in a number of laboratories, N-glycans with up to four fucose residues have been detected. However, although the linkage of three fucose residues to the N,N'-diacetylchitobiosyl core has been proven by structural and enzymatic analyses, the nature of the fourth fucose has remained uncertain. By constructing a triple mutant with deletions in the three genes responsible for core fucosylation (fut-1, fut-6 and fut-8), we have produced a nematode strain lacking products of these enzymes, but still retaining maximally one fucose residue on its N-glycans. Using mass spectrometry and HPLC in conjunction with chemical and enzymatic treatments as well as NMR, we examined a set of α-mannosidase-resistant N-glycans. Within this glycomic subpool, we can reveal that the core β-mannose can be trisubstituted and so carries not only the ubiquitous α1,3- and α1,6-mannose residues, but also a "bisecting" β-galactose, which is substoichiometrically modified with fucose or methylfucose. In addition, the α1,3-mannose can also be α-galactosylated. Our data, showing the presence of novel N-glycan modifications, will enable more targeted studies to understand the biological functions and interactions of nematode glycans.

Indexed as

AnimalsCaenorhabditis elegansChromatography, High Pressure LiquidChromatography, Reverse-PhaseFucoseFucosyltransferasesGalactoseGene Knockout TechniquesGlycoproteinsIsomerismMannosidasesMethylationMutationPolysaccharidesProtein IsoformsProteomeFucoseFucosyltransferasesGalactoseGlycoproteinsMannosidasesPolysaccharidesProtein IsoformsProteome

Identifiers

PMID26002521
PMCPMC4523199
OpenAlexW2199511939

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.