Evidence map›Paper›PMID 26001781›Full record

ArticleThe Journal of biological chemistry2015

Limited Addition of the 6-Arm β1,2-linked N-Acetylglucosamine (GlcNAc) Residue Facilitates the Formation of the Largest N-Glycan in Plants.

Jae Yong Yoo, Ki Seong Ko, Hyun-Kyeong Seo, Seongha Park, Wahyu Indra Duwi Fanata, Rikno Harmoko, Nirmal Kumar Ramasamy, Thiyagarajan Thulasinathan, Tesfaye Mengiste, Jae-Min Lim and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Plants (Basel, Switzerland) · 2022
    Review
  2. Analysis ofPlant biotechnology (Tokyo, Japan) · 2021
    Article
  3. Frontiers in plant science · 2021
    Article
  4. Lack of the α1,3-Fucosyltransferase Gene (International journal of molecular sciences · 2018
    Article
  5. Molecular & cellular proteomics : MCP · 2018
    Article
  6. Plant protein glycosylation.Glycobiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Jae Yong YooFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Ki Seong KoFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Hyun-Kyeong SeoDepartment of Chemistry, Changwon National University, 9-Sarim, Changwon 641-773, Korea, and.
Seongha ParkDepartment of Chemistry, Changwon National University, 9-Sarim, Changwon 641-773, Korea, and.
Wahyu Indra Duwi FanataFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Rikno HarmokoFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Nirmal Kumar RamasamyFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Thiyagarajan ThulasinathanFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Tesfaye MengisteDepartment of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907.
Jae-Min LimDepartment of Chemistry, Changwon National University, 9-Sarim, Changwon 641-773, Korea, and.
Sang Yeol LeeFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea.
Kyun Oh LeeFrom the Division of Applied Life Science and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea, leeko@gnu.ac.kr.
Gyeongsang National University · KRChangwon National University · KRPurdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The most abundant N-glycan in plants is the paucimannosidic N-glycan with core β1,2-xylose and α1,3-fucose residues (Man3XylFuc(GlcNAc)2). Here, we report a mechanism in Arabidopsis thaliana that efficiently produces the largest N-glycan in plants. Genetic and biochemical evidence indicates that the addition of the 6-arm β1,2-GlcNAc residue by N-acetylglucosaminyltransferase II (GnTII) is less effective than additions of the core β1,2-xylose and α1,3-fucose residues by XylT, FucTA, and FucTB in Arabidopsis. Furthermore, analysis of gnt2 mutant and 35S:GnTII transgenic plants shows that the addition of the 6-arm non-reducing GlcNAc residue to the common N-glycan acceptor GlcNAcMan3(GlcNAc)2 inhibits additions of the core β1,2-xylose and α1,3-fucose residues. Our findings indicate that plants limit the rate of the addition of the 6-arm GlcNAc residue to the common N-glycan acceptor as a mechanism to facilitate formation of the prevalent N-glycans with Man3XylFuc(GlcNAc)2 and (GlcNAc)2Man3XylFuc(GlcNAc)2 structures.

Indexed as

AcetylglucosamineArabidopsisCarbohydrate SequenceMolecular Sequence DataPolysaccharidesAcetylglucosaminePolysaccharidescarbohydrate processingglycosylationglycosyltransferaseplantpost-translational modification (PTM)

Identifiers

PMID26001781
PMCPMC4505410
OpenAlexW2416852591

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.