Evidence map›Paper›PMID 26001398›Full record

ArticleDiabetes2015

DNA Methylation Variants at HIF3A Locus, B-Vitamin Intake, and Long-term Weight Change: Gene-Diet Interactions in Two U.S. Cohorts.

Tao Huang, Yan Zheng, Qibin Qi, Min Xu, Sylvia H Ley, Yanping Li, Jae H Kang, Janey Wiggs, Louis R Pasquale, Andrew T Chan and 6 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00005152 (Nurses' Health Study), which is not on this map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00005152 active not recruitingnot on this map

Nurses' Health Study (Cardiovascular Component)

TypeobservationalSponsorBrigham and Women's HospitalRan1980 to 2029Enrolled121,700ConditionsCardiovascular Diseases, Diabetes Mellitus, Coronary Disease, Heart Diseases
3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  9. Review
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  12. Article
  13. HIF3A Inhibition Triggers Browning of White AdipocytesFrontiers in cell and developmental biology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Tao HuangDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA.
Yan ZhengDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA.
Qibin QiDepartment of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY.
Min XuShanghai Clinical Center for Endocrine and Metabolic Diseases and Shanghai Institute of Endocrine and Metabolic Diseases, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Sylvia H LeyDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA.
Yanping LiDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA.
Jae H KangChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA.
Janey WiggsDepartment of Ophthalmology, Harvard Medical School, Massachusetts Eye and Ear Infirmary, Boston, MA.
Louis R PasqualeChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA Department of Ophthalmology, Harvard Medical School, Massachusetts Eye and Ear Infirmary, Boston, MA.
Andrew T ChanDivision of Gastroenterology, Massachusetts General Hospital, Boston, MA.
Eric B RimmDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA.
David J HunterDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA.
JoAnn E MansonChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA Division of Preventive Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA.
Walter C WillettDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA.
Frank B HuDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA.
Lu QiDepartment of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA nhlqi@channing.harvard.edu.
Harvard University · USBrigham and Women's Hospital · USAlbert Einstein College of Medicine · USMassachusetts Eye and Ear Infirmary · USMassachusetts General Hospital · USShanghai Jiao Tong University · CN

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI TWOROGER, SHELLEY S · 2000 to 2019
$77.8M
Validity of Diet and Activity Measures in WomenP01CA055075 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI WILLETT, WALTER C. · 1991 to 2009
$41.8M
Transgenic CoreP30DK046200 · NIDDK · TUFTS MEDICAL CENTER · PI CORKEY, BARBARA E. · 1992 to 2021
$25.0M
Molecular pathological epidemiology of colorectal cancerU01CA137088 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETERS, ULRIKE · 2009 to 2018
$21.8M
RISK FACTORS FOR CVD IN WOMENR01HL034594 · NHLBI · TULANE UNIVERSITY OF LOUISIANA · PI JoAnn Elisabeth Manson, Lu Qi · 1985 to 2026
$13.8M
BIOCHEMICAL MARKERS IN THE NURSES'HEALTH STUDY COHORTR01CA049449 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HANKINSON, SUSAN E · 1989 to 2008
$11.3M
Risk Factors for Ischemic Stroke in WomenR01HL088521 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI REXRODE, KATHRYN M · 2008 to 2025
$9.9M
Sleep Duration, Childhood Energy Balance, and Insulin Resistance in AdolescenceU54CA155626 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI HU, FRANK B · 2011 to 2015
$9.6M
The Pathobiology of NephrolithiasisP01DK070756 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI MOUNT, DAVID BRUCE · 2007 to 2011
$8.4M
Gene-Environment Interactions in GlaucomaR01EY015473 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI PASQUALE, LOUIS ROBERT · 2005 to 2021
$8.3M
BIOCHEMICAL AND GENETIC MARKERS OF TYPE 2 DIABETES RISKR01DK058845 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI HU, FRANK B · 2001 to 2013
$7.8M
Variability in Adipokine Genes and AtherosclerosisR01HL073168 · NHLBI · JOSLIN DIABETES CENTER · PI DORIA, ALESSANDRO · 2003 to 2012
$5.8M
NCI NIH HHS CA-055075NCI NIH HHS CA-134958NCI NIH HHS CA-49449NCI NIH HHS CA-87969NCI NIH HHS P01 CA055075NCI NIH HHS P01 CA087969NCI NIH HHS R01 CA049449NCI NIH HHS R01 CA134958NCI NIH HHS U01 CA049449NCI NIH HHS U01 CA137088NCI NIH HHS U01-CA-137088NCI NIH HHS U54 CA155626NCI NIH HHS U54-CA-155626NEI NIH HHS EY-015473NEI NIH HHS R01 EY015473NHGRI NIH HHS U01 HG004399NHGRI NIH HHS U01-HG-004399NHGRI NIH HHS U01 HG004728NHGRI NIH HHS U01-HG-004728NHLBI NIH HHS HL-071981NHLBI NIH HHS HL-073168NHLBI NIH HHS HL-088521NHLBI NIH HHS HL-126024NHLBI NIH HHS HL-34594NHLBI NIH HHS R01 HL034594NHLBI NIH HHS R01 HL071981NHLBI NIH HHS R01 HL073168NHLBI NIH HHS R01 HL088521NHLBI NIH HHS R21 HL126024NIDDK NIH HHS DK-080140NIDDK NIH HHS DK-091718NIDDK NIH HHS DK-098311NIDDK NIH HHS DK-100383NIDDK NIH HHS DK-46200NIDDK NIH HHS DK-58845NIDDK NIH HHS DK-70756NIDDK NIH HHS K24 DK080140NIDDK NIH HHS K24 DK098311NIDDK NIH HHS P01 DK070756NIDDK NIH HHS P30 DK046200NIDDK NIH HHS P30-DK-46200NIDDK NIH HHS R01 DK058845NIDDK NIH HHS R01 DK091718NIDDK NIH HHS R01 DK100383
6 · The paper itself

Abstract

The first epigenome-wide association study of BMI identified DNA methylation at an HIF3A locus associated with BMI. We tested the hypothesis that DNA methylation variants are associated with BMI according to intake of B vitamins. In two large cohorts, we found significant interactions between the DNA methylation-associated HIF3A single nucleotide polymorphism (SNP) rs3826795 and intake of B vitamins on 10-year changes in BMI. The association between rs3826795 and BMI changes consistently increased across the tertiles of total vitamin B2 and B12 intake (all P for interaction <0.01). The differences in the BMI changes per increment of minor allele were -0.10 (SE 0.06), -0.01 (SE 0.06), and 0.12 (SE 0.07) within subgroups defined by increasing tertiles of total vitamin B2 intake and -0.10 (SE 0.06), -0.01 (SE 0.06), and 0.10 (SE 0.07) within subgroups defined by increasing tertiles of total vitamin B12 intake. In two independent cohorts, a DNA methylation variant in HIF3A was associated with BMI changes through interactions with total or supplemental vitamin B2, vitamin B12, and folate. These findings suggest a potential causal relation between DNA methylation and adiposity.

Indexed as

Gene-Environment InteractionVitamin B ComplexAdultAgedApoptosis Regulatory ProteinsBasic Helix-Loop-Helix ProteinsBody Mass IndexCohort StudiesDietDNA MethylationFemaleFolic AcidHumansLongitudinal StudiesMaleMiddle AgedApoptosis Regulatory ProteinsBasic Helix-Loop-Helix ProteinsFolic AcidHIF3A protein, humanRepressor ProteinsRiboflavinVitamin B 12Vitamin B 6Vitamin B Complex

Identifiers

PMID26001398
PMCPMC4542450
OpenAlexW2164468750

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.