Evidence map›Paper›PMID 26001070›Full record

ArticlePloS one2015

Diversification and Distribution of Ruminant Chlamydia abortus Clones Assessed by MLST and MLVA.

Victoria I Siarkou, Fabien Vorimore, Nadia Vicari, Simone Magnino, Annie Rodolakis, Yvonne Pannekoek, Konrad Sachse, David Longbottom, Karine Laroucau

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Chlamydiosis in Animals.Animals : an open access journal from MDPI · 2024
    Review
  2. Article
  3. Occurrence ofPathogens (Basel, Switzerland) · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 6 countries.

Victoria I SiarkouLaboratory of Microbiology and Infectious Diseases, School of Veterinary Medicine, Faculty of Health Sciences, Aristotle University of Thessaloniki, Thessaloniki, Greece.
Fabien VorimoreAnses, Animal Health Laboratory, Bacterial Zoonoses Unit, University Paris-Est, Maisons-Alfort, France.
Nadia VicariIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna "Bruno Ubertini", Sezione Diagnostica di Pavia, Pavia, Italy.
Simone MagninoIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna "Bruno Ubertini", Sezione Diagnostica di Pavia, Pavia, Italy.
Annie RodolakisINRA, Infectiologie Animale et Santé Publique, Nouzilly, France.
Yvonne PannekoekAcademic Medical Center, Department of Medical Microbiology, University of Amsterdam, Amsterdam, The Netherlands.
Konrad SachseInstitute of Molecular Pathogenesis, Friedrich-Loeffler-Institut (Federal Research Institute for Animal Health), Jena, Germany.
David LongbottomMoredun Research Institute, Edinburgh, Midlothian, United Kingdom.
Karine LaroucauAnses, Animal Health Laboratory, Bacterial Zoonoses Unit, University Paris-Est, Maisons-Alfort, France.
Département Santé Animale · FRIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna "Bruno Ubertini" · ITAcademic Medical Center · NLAristotle University of Thessaloniki · GRFriedrich-Loeffler-Institut · DEInfectiologie Animale et Santé Publique · FRMoredun Research Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chlamydia abortus, an obligate intracellular bacterium, is the most common infectious cause of abortion in small ruminants worldwide and has zoonotic potential. We applied multilocus sequence typing (MLST) together with multiple-locus variable-number tandem repeat analysis (MLVA) to genotype 94 ruminant C. abortus strains, field isolates and samples collected from 1950 to 2011 in diverse geographic locations, with the aim of delineating C. abortus lineages and clones. MLST revealed the previously identified sequence types (STs) ST19, ST25, ST29 and ST30, plus ST86, a recently-assigned type on the Chlamydiales MLST website and ST87, a novel type harbouring the hemN_21 allele, whereas MLVA recognized seven types (MT1 to MT7). Minimum-spanning-tree analysis suggested that all STs but one (ST30) belonged to a single clonal complex, possibly reflecting the short evolutionary timescale over which the predicted ancestor (ST19) has diversified into three single-locus variants (ST86, ST87 and ST29) and further, through ST86 diversification, into one double-locus variant (ST25). ST descendants have probably arisen through a point mutation evolution mode. Interestingly, MLVA showed that in the ST19 population there was a greater genetic diversity than in other STs, most of which exhibited the same MT over time and geographical distribution. However, the evolutionary pathways of C. abortus STs seem to be diverse across geographic distances with individual STs restricted to particular geographic locations. The ST30 singleton clone displaying geographic specificity and represented by the Greek strains LLG and POS was effectively distinguished from the clonal complex lineage, supporting the notion that possibly two separate host adaptations and hence independent bottlenecks of C. abortus have occurred through time. The combination of MLST and MLVA assays provides an additional level of C. abortus discrimination and may prove useful for the investigation and surveillance of emergent C. abortus clonal populations.

Indexed as

Abortion, VeterinaryAnimalsCattleChlamydiaElectrophoresis, Gel, Pulsed-FieldGenotypeGoatsMinisatellite RepeatsMultilocus Sequence TypingSheep

Identifiers

PMID26001070
PMCPMC4441495
OpenAlexW1601447969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.