Evidence map›Paper›PMID 26000976›Full record

ArticlePloS one2015

Whitefly genome expression reveals host-symbiont interaction in amino acid biosynthesis.

Santosh Kumar Upadhyay, Shailesh Sharma, Harpal Singh, Sameer Dixit, Jitesh Kumar, Praveen C Verma, K Chandrashekar

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Santosh Kumar UpadhyayDepartment of Botany, Panjab University, Chandigarh, 160014, India; National Agri-Food Biotechnology Institute, (Department of Biotechnology, Government of India), C-127, Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab, 160071, India.
Shailesh SharmaNational Agri-Food Biotechnology Institute, (Department of Biotechnology, Government of India), C-127, Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab, 160071, India.
Harpal SinghCSIR-National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226001, India.
Sameer DixitCSIR-National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2-Rafi Marg, New Delhi, India.
Jitesh KumarNational Agri-Food Biotechnology Institute, (Department of Biotechnology, Government of India), C-127, Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab, 160071, India.
Praveen C VermaCSIR-National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2-Rafi Marg, New Delhi, India.
K ChandrashekarCSIR-National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226001, India; Indian Agricultural Research Institute-Regional Station, Baner phata, ITI road, Aundh, Pune, 411007, Maharashtra, India.
Government of India · INCouncil of Scientific and Industrial Research · INAcademy of Scientific and Innovative Research · INNational Botanical Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhitefly (Bemisia tabaci) complex is a serious insect pest of several crop plants worldwide. It comprises several morphologically indistinguishable species, however very little is known about their genetic divergence and biosynthetic pathways. In the present study, we performed transcriptome sequencing of Asia 1 species of B. tabaci complex and analyzed the interaction of host-symbiont genes in amino acid biosynthetic pathways. METHODOLOGY/PRINCIPAL

findingsWe obtained about 83 million reads using Illumina sequencing that assembled into 72716 unitigs. A total of 21129 unitigs were annotated at stringent parameters. Annotated unitigs were mapped to 52847 gene ontology (GO) terms and 131 Kyoto encyclopedia of genes and genomes (KEGG) pathways. Expression analysis of the genes involved in amino acid biosynthesis pathways revealed the complementation between whitefly and its symbiont partner Candidatus Portiera aleyrodidarum. Most of the non-essential amino acids and intermediates of essential amino acid pathways were supplied by the host insect to its symbiont. The symbiont expressed the pathways for the essential amino acids arginine, threonine and tryptophan and the immediate precursors of valine, leucine, isoleucine and phenyl-alanine. High level expression of the amino acid transporters in the whitefly suggested the molecular mechanisms for the exchange of amino acids between the host and the symbiont. CONCLUSIONS/SIGNIFICANCE: Our study provides a comprehensive transcriptome data for Asia 1 species of B. tabaci complex that focusses light on integration of host and symbiont genes in amino acid biosynthesis pathways.

Indexed as

Genes, InsectAmino AcidsAnimalsGene Expression ProfilingHemipteraSequence Analysis, DNASymbiosisTranscriptomeAmino Acids

Identifiers

PMID26000976
PMCPMC4441466
OpenAlexW321376826

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.