Evidence map›Paper›PMID 26000486›Full record

ArticleCell2015

Single-cell transcriptome analyses reveal signals to activate dormant neural stem cells.

Yuping Luo, Volkan Coskun, Aibing Liang, Juehua Yu, Liming Cheng, Weihong Ge, Zhanping Shi, Kunshan Zhang, Chun Li, Yaru Cui and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed, 1 pooled it
16.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 1 synthesis or guideline pooled it, 273 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. GFAPProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Personalized Stem Cell-Based Regeneration in Spinal Cord Injury Care.International journal of molecular sciences · 2025
    Review
  15. Article
  16. Article
  17. VEGF-FGF Signaling Activates Quiescent CD63Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  18. Review
  19. Review
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 2 countries.

Yuping LuoStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China; College of Life Sciences, Nanchang University, Nanchang 330031, China.
Volkan CoskunDepartment of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Aibing LiangStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Juehua YuStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Liming ChengStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China; Department of Spine Surgery, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Weihong GeDepartment of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Zhanping ShiStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Kunshan ZhangStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Chun LiShanghai Stem Cell Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Yaru CuiCollege of Life Sciences, Nanchang University, Nanchang 330031, China.
Haijun LinCollege of Life Sciences, Nanchang University, Nanchang 330031, China.
Dandan LuoStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Junbang WangStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Connie LinDepartment of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Zachary DaiDepartment of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Hongwen ZhuTianjing Hospital, Tianjin Academy of Integrative Medicine, Tianjin 300211, China.
Jun ZhangStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Jie LiuStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Hailiang LiuStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China.
Jean deVellisDepartment of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Yi Eve SunStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China; Collaborative Innovation Center for Brain Science, Tongji University, Shanghai 200092, China; Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA; Yunnan Key Laboratory of Primate Biomedical Research, Kunming 650500, China. Electronic address: yi.eve.sun@gmail.com.
Siguang LiStem Cell Translational Research Center, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, China; Collaborative Innovation Center for Brain Science, Tongji University, Shanghai 200092, China. Electronic address: siguangli@163.com.
Tongji Hospital · CNUniversity of California, Los Angeles · USTongji University · CNNanchang University · CNShanghai Jiao Tong University · CNTianjin Hospital · CN

Funding

The Role of Striosome Neurons in Mediating Opiod RewardP50DA005010 · NIDA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YANG, XIANGDONG WILLIAM · 1987 to 2021
$30.7M
Stem CellsP30HD004612 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CARPENTER, ELLEN M. · 1985 to 2014
$19.5M
Human Embryonic Stem Cell CoreP01GM081621 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PLATH, KATHRIN · 2008 to 2012
$9.3M
NICHD NIH HHS -P30HD004612NICHD NIH HHS P30 HD004612NIDA NIH HHS P50 DA005010NIDA NIH HHS P50DA005010NIGMS NIH HHS P01 GM081621NIGMS NIH HHS P01 GM081621-01A1
6 · The paper itself

Abstract

The scarcity of tissue-specific stem cells and the complexity of their surrounding environment have made molecular characterization of these cells particularly challenging. Through single-cell transcriptome and weighted gene co-expression network analysis (WGCNA), we uncovered molecular properties of CD133(+)/GFAP(-) ependymal (E) cells in the adult mouse forebrain neurogenic zone. Surprisingly, prominent hub genes of the gene network unique to ependymal CD133(+)/GFAP(-) quiescent cells were enriched for immune-responsive genes, as well as genes encoding receptors for angiogenic factors. Administration of vascular endothelial growth factor (VEGF) activated CD133(+) ependymal neural stem cells (NSCs), lining not only the lateral but also the fourth ventricles and, together with basic fibroblast growth factor (bFGF), elicited subsequent neural lineage differentiation and migration. This study revealed the existence of dormant ependymal NSCs throughout the ventricular surface of the CNS, as well as signals abundant after injury for their activation.

Indexed as

AC133 AntigenAnimalsAntigens, CDCell DifferentiationCell MovementEpendymaFibroblast Growth FactorsGene Expression ProfilingGene Regulatory NetworksGlycoproteinsMiceNeural Stem CellsPeptidesSequence Analysis, RNASingle-Cell AnalysisVascular Endothelial Growth Factor AAC133 AntigenAntigens, CDFibroblast Growth FactorsGlycoproteinsPeptidesPROM1 protein, humanProm1 protein, mouseVascular Endothelial Growth Factor A

Identifiers

PMID26000486
PMCPMC4851109
OpenAlexW2104719009

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.