Evidence map›Paper›PMID 25999941›Full record

ArticleFrontiers in microbiology2015

Prevalence and antimicrobial resistance of Shigella flexneri serotype 2 variant in China.

Xianyan Cui, Jian Wang, Chaojie Yang, Beibei Liang, Qiuxia Ma, Shengjie Yi, Hao Li, Hongbo Liu, Peng Li, Zhihao Wu and 7 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Review
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  3. Antibacterial Activity of Epigallocatechin Gallate (EGCG) againstInternational journal of environmental research and public health · 2023
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  5. Use of Molecular Methods To DetectJournal of clinical microbiology · 2022
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  6. Article
  7. Antimicrobial Susceptibility Pattern ofInfectious disease reports · 2021
    Article
  8. Article
  9. Article
  10. A Novel Bacteriocin AgainstFrontiers in microbiology · 2021
    Article
  11. Article
  12. Molecular epidemiology of Shigella flexneri isolated from pediatrics in a diarrhea-endemic area of Khyber Pakhtunkhwa, Pakistan.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Article
  13. Article
  14. Infection and drug resistance · 2019
    Article
  15. Article
  16. Two novel mutations inAnnals of translational medicine · 2018
    Article
  17. Article
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Xianyan CuiNuclear-Agricultural Sciences, Zhejiang University Hangzhou, China ; Institute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Jian WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Chaojie YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Beibei LiangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Qiuxia MaInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Shengjie YiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Hao LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Hongbo LiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Peng LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Zhihao WuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Jing XieInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Leili JiaInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Rongzhang HaoInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Ligui WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Yuejin HuaNuclear-Agricultural Sciences, Zhejiang University Hangzhou, China.
Shaofu QiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Hongbin SongInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shigella flexneri serotype 2 variant (II:3,4,7,8) was isolated in 2008 and first reported in China in 2013. In the present study, epidemiological surveillance from 2003 to 2013 in China suggested that this serotype first appeared in Guangxi in 2003; it then emerged in Shanghai and Xinjiang in 2004 and in Henan in 2008. Of the 1813 S. flexneri isolates, 58 S. flexneri serotype 2 variant strains were identified. Serotype 2 variant has emerged as a prominent serotype in recent years, with 2a (32.6%), X variant (25.2%), 1a (9.4%), X (6.3%), 2b (5.4%), and 1b (3.6%). According to phenotypic and genotypic analysis, the serotype 2 variant originated from 2a to 2b. A higher antibiotic resistance rate was observed between 2009 and 2013 than that between 2003 and 2008. Among 22 cephalosporin-resistant isolates, bla TEM-1, bla OXA-1, bla CTX-3, bla CTX-14, and bla CTX-79 were detected. Among 22 fluoroquinolone-resistant isolates, a Ser80Ile mutation in parC was present in all of the isolates. Moreover, 21 isolates had three gyrA point mutations (Ser83Leu, His211Tyr, Asp87Asn, or Gly) and one isolate had two gyrA point mutations (Ser83Leu and His211Tyr). The prevalence of His211Tyr in the fluoroquinolone-resistant isolates is concerning, and the mutation was first reported in China. Besides, 22 isolates harbored the aac(6')-Ib-cr gene, and two isolates harbored qnrS1. In view of the increased epidemic frequency and multidrug-resistant strain emergence, continuous surveillance will be needed to understand the actual disease burden and provide guidance for shigellosis.

Indexed as

antibiotic resistance rateepidemic frequencymultidrug-resistantserotype 2 variantShigella flexneri

Identifiers

PMID25999941
PMCPMC4423435

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.